Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis.
T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label.
This package is part of FSL.
Related packages:
fsl-5.0-doc-wiki, fsl-atlases, fsl-bangor-cerebellar-atlas, fsl-first-data, fsl-harvard-oxford-cortical-lateralized-atlas, fsl-jhu-dti-whitematter-atlas, fsl-juelich-histological-atlas, fsl-mni-structural-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-possum-data, fsl-resting-connectivity-parcellation-atlases, fsl-subthalamic-nucleus-atlas, fsl-talairach-daemon-atlas
Additional information
-
Rahul S. Desikan, Florent Ségonne, Bruce Fischl, Brian T. Quinn, Bradford C. Dickerson, Deborah Blacker, Randy L. Buckner, Anders M. Dale, R. Paul Maguire, Bradley T. Hyman, Marilyn S. Albert, Ronald J. Killiany (2006).
An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage, 31, 968–980.
URL
DOI
PubMed
-
Simon B Eickhoff, Klaas E Stephan, Hartmut Mohlberg, Christian Grefkes, Gereon R Fink, Katrin Amunts, Karl Zilles (2005).
A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data. Neuroimage, 25, 1325–1335.
URL
DOI
PubMed
-
Kegang Hua, Jiangyang Zhang, Setsu Wakana, Hangyi Jiang, Xin Li, Daniel S Reich, Peter A Calabresi, James J Pekar, Peter C M van Zijl, Susumu Mori (2008).
Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification. Neuroimage, 39, 336–347.
URL
DOI
PubMed
-
J Mazziotta, A Toga, A Evans, P Fox, J Lancaster, K Zilles, R Woods, T Paus, G Simpson, B Pike, C Holmes, L Collins, P Thompson, D MacDonald, M Iacoboni, T Schormann, K Amunts, N Palomero-Gallagher, S Geyer, L Parsons, K Narr, N Kabani, G Le Goualher, D Boomsma, T Cannon, R Kawashima, and B Mazoyer (2001).
A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM). The Royal Society Philosophical Transactions B, 356, 1293–1322.
URL
DOI
-
Jack L. Lancaster, Marty G. Woldorff, Lawrence M. Parsons, Mario Liotti, Catarina S. Freitas, Lacy Rainey, Peter V. Kochunov, Dan Nickerson, Shawn A. Mikiten, Peter T. Fox (2000).
Automated Talairach atlas labels for functional brain mapping. Human Brain Mapping, 10, 120–131.
URL
DOI
PubMed
-
TEJ Behrens, H. Johansen-Berg, MW Woolrich, SM Smith, CAM Wheeler-Kingshott, PA Boulby, GJ Barker, EL Sillery, K. Sheehan, O. Ciccarelli , AJ Thompson, JM Brady, PM Matthews (2003).
Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nature Neuroscience, 6, 750–757.
URL
DOI
PubMed
-
Jörn Diedrichsen, Joshua H Balsters, Jonathan Flavell, Emma Cussans, Narender Ramnani (2009).
A probabilistic MR atlas of the human cerebellum. Neuroimage, 46, 39-46.
URL
DOI
PubMed
