fsl-juelich-histological-atlas

brain atlas based on cyto- and myelo-architectonic segmentations


A probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations, performed by the team of Profs Zilles and Amunts at the Research Center Jülich and kindly provided by Simon Eickhoff.

The atlas contains 32 grey matter structures and 10 white matter structures. This is the same data as used in Eickhoff’s Anatomy Toolbox v1.5. The atlas is based on the microscopic and quantitative histological examination of ten human post-mortem brains. The histological volumes of these brains were 3D reconstructed and spatially normalised into the space of the MNI single subject template to create a probabilistic map of each area. For the FSL version of this atlas, these probabilistic maps were then linearly transformed into MNI152 space.

This package is part of FSL.

Related packages: fsl-5.0-doc-wiki, fsl-atlases, fsl-bangor-cerebellar-atlas, fsl-first-data, fsl-harvard-oxford-atlases, fsl-harvard-oxford-cortical-lateralized-atlas, fsl-jhu-dti-whitematter-atlas, fsl-mni-structural-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-possum-data, fsl-resting-connectivity-parcellation-atlases, fsl-subthalamic-nucleus-atlas, fsl-talairach-daemon-atlas


Additional information
  • Rahul S. Desikan, Florent Ségonne, Bruce Fischl, Brian T. Quinn, Bradford C. Dickerson, Deborah Blacker, Randy L. Buckner, Anders M. Dale, R. Paul Maguire, Bradley T. Hyman, Marilyn S. Albert, Ronald J. Killiany (2006). An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage, 31, 968–980. URL DOI PubMed
  • Simon B Eickhoff, Klaas E Stephan, Hartmut Mohlberg, Christian Grefkes, Gereon R Fink, Katrin Amunts, Karl Zilles (2005). A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data. Neuroimage, 25, 1325–1335. URL DOI PubMed
  • Kegang Hua, Jiangyang Zhang, Setsu Wakana, Hangyi Jiang, Xin Li, Daniel S Reich, Peter A Calabresi, James J Pekar, Peter C M van Zijl, Susumu Mori (2008). Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification. Neuroimage, 39, 336–347. URL DOI PubMed
  • J Mazziotta, A Toga, A Evans, P Fox, J Lancaster, K Zilles, R Woods, T Paus, G Simpson, B Pike, C Holmes, L Collins, P Thompson, D MacDonald, M Iacoboni, T Schormann, K Amunts, N Palomero-Gallagher, S Geyer, L Parsons, K Narr, N Kabani, G Le Goualher, D Boomsma, T Cannon, R Kawashima, and B Mazoyer (2001). A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM). The Royal Society Philosophical Transactions B, 356, 1293–1322. URL DOI
  • Jack L. Lancaster, Marty G. Woldorff, Lawrence M. Parsons, Mario Liotti, Catarina S. Freitas, Lacy Rainey, Peter V. Kochunov, Dan Nickerson, Shawn A. Mikiten, Peter T. Fox (2000). Automated Talairach atlas labels for functional brain mapping. Human Brain Mapping, 10, 120–131. URL DOI PubMed
  • TEJ Behrens, H. Johansen-Berg, MW Woolrich, SM Smith, CAM Wheeler-Kingshott, PA Boulby, GJ Barker, EL Sillery, K. Sheehan, O. Ciccarelli , AJ Thompson, JM Brady, PM Matthews (2003). Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nature Neuroscience, 6, 750–757. URL DOI PubMed
  • Jörn Diedrichsen, Joshua H Balsters, Jonathan Flavell, Emma Cussans, Narender Ramnani (2009). A probabilistic MR atlas of the human cerebellum. Neuroimage, 46, 39-46. URL DOI PubMed

Maintainer information

This software package is maintained for (Neuro)Debian by the follow individuals and/or groups:

Maintainer avatar
NeuroDebian Team
Maintainer avatar
Michael Hanke
Maintainer avatar
Yaroslav Halchenko

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Datasets (data)   5.0.7-2 i386, amd64, sparc
The source code for this portal is licensed under the GPL-3 and is available on GitHub.