cmtk

Computational Morphometry Toolkit


A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O.

The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear regression).


Additional information
  • T. Rohlfing (2009). User Guide to The Computational Morphometry Toolkit. The Insight Journal. URL

Maintainer information

This software package is maintained for (Neuro)Debian by the follow individuals and/or groups:

Maintainer avatar
NeuroDebian Maintainers
Maintainer avatar
Yaroslav Halchenko
Maintainer avatar
Michael Hanke

In order to get support, or to get in touch with a maintainer, please click the ‘Help’ button at the top of the page.

Advanced user information

Version control system available: Browse sources

Package availability chart
Distribution Base version Our version Architectures
Debian GNU/Linux 6.0 (squeeze)   3.2.2-1~nd60+1 i386, amd64
Debian GNU/Linux 7.0 (wheezy) 2.2.2-2 3.2.2-1~nd70+1 i386, amd64
Debian GNU/Linux 8.0 (jessie) 3.2.2-1.3 3.2.2-1~nd80+1 i386, amd64
Debian testing (stretch) 3.2.2-1.3 3.2.2-1~nd80+1+nd90+1 i386, amd64
Debian unstable (sid) 3.2.2-1.3 3.2.2-1~nd+1 i386, amd64
Ubuntu 10.04 LTS “Lucid Lynx” (lucid)   3.2.2-1~nd10.04+1 i386, amd64
Ubuntu 12.04 LTS “Precise Pangolin” (precise) 2.1.0-1 3.2.2-1~nd12.04+1 i386, amd64
Ubuntu 14.04 “Trusty Tahr” (trusty) 3.0.0-1ubuntu1 3.2.2-1~nd14.04+1 i386, amd64
Ubuntu 14.10 “Utopic Unicorn” (utopic) 3.2.1-1 3.2.2-1~nd14.04+1+nd14.10+1 i386, amd64
Ubuntu 15.04 “Vivid Vervet” (vivid) 3.2.2-1.3    
The source code for this portal is licensed under the GPL-3 and is available on GitHub.