fsl-5.0-core¶

analysis tools for FMRI, MRI and DTI brain imaging

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FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis.

Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net.

Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the ‘fsl-5.0-complete’ package from NeuroDebian.

FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format.

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Related packages: fsl, fsl-5.0, fsl-core

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The software authors ask users to register. Available user statistics may be helpful to acquire funding for this project and therefore foster continued development in the future.

Additional information

NeuroLex NITRC

Mark Jenkinson, Christian F. Beckmann, Timothy E. J. Behrens, Mark W. Woolrich, Stephen M. Smith (2012). FSL. NeuroImage, 62, 782-790. DOI PubMed
M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith (2009). Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45, 73-86. PubMed
S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, P.M. Matthews (2004). Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23, 208-219. DOI PubMed
Additional references »

Maintainer information¶

This software package is maintained for (Neuro)Debian by the follow individuals and/or groups:

NeuroDebian Team

Michael Hanke

Yaroslav Halchenko

In order to get support, or to get in touch with a maintainer, please click the ‘Help’ button at the top of the page.

Advanced user information¶

Version control system available: Browse sources

Package availability chart¶
Distribution	Base version	Our version	Architectures
Debian GNU/Linux 6.0 (squeeze)	4.1.6-4	5.0.8-3~nd60+1	i386, amd64
Debian GNU/Linux 7.0 (wheezy)	4.1.9-7	5.0.8-3~nd70+1	i386, amd64
Debian GNU/Linux 8.0 (jessie)	5.0.7-4	5.0.8-3~nd80+1	i386, amd64
Debian testing (stretch)	5.0.7-4	5.0.8-3~nd80+1+nd90+1	i386, amd64
Debian unstable (sid)	5.0.8-5	5.0.8-3~nd+1	i386, amd64
Ubuntu 10.04 LTS “Lucid Lynx” (lucid)	4.1.4-2ubuntu1	5.0.8-2~nd10.04+1	i386, amd64
Ubuntu 12.04 LTS “Precise Pangolin” (precise)	4.1.8-1ubuntu1	5.0.8-3~nd12.04+1	i386, amd64
Ubuntu 14.04 “Trusty Tahr” (trusty)	4.1.9-7.2	5.0.8-3~nd14.04+1	i386, amd64
Ubuntu 14.10 “Utopic Unicorn” (utopic)	5.0.7-4	5.0.8-3~nd14.10+1	i386, amd64
Ubuntu 15.04 “Vivid Vervet” (vivid)	5.0.7-4	5.0.8-3~nd14.10+1+nd15.04+1	i386, amd64