itksnap¶

semi-automatic segmentation of structures in 3D images

SNAP provides semi-automatic segmentation of structures in medical images (e.g. magnetic resonance images of the brain) using active contour methods, as well as manual delineation and image navigation. Noteworthy features are:

Linked cursor for seamless 3D navigation
Manual segmentation in three orthogonal planes at once
Support for many different 3D image formats, including NIfTI
Support for concurrent, linked viewing and segmentation of multiple images
Limited support for color images (e.g., diffusion tensor maps)
3D cut-plane tool for fast post-processing of segmentation results

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Additional information

Paul A. Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee,, Guido Gerig (2006). User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability. Neuroimage, 31: 1116-1128. URL DOI

Maintainer information¶

This software package is maintained for (Neuro)Debian by the follow individuals and/or groups:

NeuroDebian Team

Michael Hanke

Yaroslav Halchenko

Gert Wollny

In order to get support, or to get in touch with a maintainer, please click the ‘Help’ button at the top of the page.

Advanced user information¶

Version control system available: Browse sources

Package availability chart¶
Distribution	Base version	Our version	Architectures
Debian GNU/Linux 6.0 (squeeze)	2.0.0+cvs20100615-1	2.2.0-1~nd60+1	i386, amd64
Debian GNU/Linux 7.0 (wheezy)	2.2.0-1.1
Debian GNU/Linux 8.0 (jessie)	2.2.0-1.1	3.2.0-1~nd80+1	amd64
Debian testing (stretch)		3.2.0-1~nd80+1+nd90+1	i386, amd64
Debian unstable (sid)	3.2.0-2	3.2.0-1~nd+1	amd64
	3.2.0-2	2.2.0-1~nd+1	i386
Ubuntu 10.04 LTS “Lucid Lynx” (lucid)		2.2.0-1~nd10.04+1	i386, amd64
Ubuntu 12.04 LTS “Precise Pangolin” (precise)	2.2.0-1build3
Ubuntu 14.04 “Trusty Tahr” (trusty)	2.2.0-1.1
Ubuntu 14.10 “Utopic Unicorn” (utopic)	2.2.0-1.1
Ubuntu 15.04 “Vivid Vervet” (vivid)	2.2.0-1.1