Packages for Magnetic Reasonance Imaging

Source Binary Description
afni
afni toolkit for analyzing and visualizing functional MRI data
afni-common miscellaneous scripts and data files for AFNI
afni-dbg debug symbols for AFNI
afni-dev header and static libraries for AFNI plugin development
caret
caret Computerized Anatomical Reconstruction and Editing Toolkit
connectome-workbench
connectome-workbench brain visualization, analysis and discovery tool
connectome-workbench-dbg brain visualization, analysis and discovery tool -- debug symbols
connectomeviewer
connectomeviewer Interactive Analysis and Visualization for MR Connectomics
debruijn
debruijn De Bruijn cycle generator
dicomnifti
dicomnifti converts DICOM files into the NIfTI format
fsl
fsl-5.0-core analysis tools for FMRI, MRI and DTI brain imaging
fsl-core metapackage for the latest version of FSL
fslview
fslview viewer for (f)MRI and DTI data
fslview-doc Documentation for FSLView
itksnap
itksnap semi-automatic segmentation of structures in 3D images
lipsia
lipsia analysis suite for MRI and fMRI data
lipsia-doc documentation for LIPSIA
mriconvert
mriconvert medical image file conversion utility
mricron
mricron magnetic resonance image conversion, viewing and analysis
mricron-data data files for MRIcron
mricron-doc data files for MRIcron
nibabel
python-nibabel Python bindings to various neuroimaging data formats
python-nibabel-doc documentation for NiBabel
python3-nibabel Python3 bindings to various neuroimaging data formats
nifticlib
libnifti-dev IO libraries for the NIfTI-1 data format
libnifti-doc NIfTI library API documentation
libnifti2 IO libraries for the NIfTI-1 data format
nifti-bin tools shipped with the NIfTI library
nipy
python-nipy Analysis of structural and functional neuroimaging data
python-nipy-doc documentation and examples for NiPy
python-nipy-lib Analysis of structural and functional neuroimaging data
python-nipy-lib-dbg Analysis of structural and functional neuroimaging data
nipype
python-nipype Neuroimaging data analysis pipelines in Python
python-nipype-doc Neuroimaging data analysis pipelines in Python -- documentation
nitime
python-nitime timeseries analysis for neuroscience data (nitime)
python-nitime-doc timeseries analysis for neuroscience data (nitime) -- documentation
openmeeg
libopenmeeg-dev openmeeg library -- development files
libopenmeeg1 library for solving EEG and MEG forward and inverse problems
openmeeg-tools openmeeg library -- command line tools
python-openmeeg openmeeg library -- Python bindings
pydicom
python-dicom DICOM medical file reading and writing
pymvpa2
python-mvpa2 multivariate pattern analysis with Python v. 2
python-mvpa2-doc documentation and examples for PyMVPA v. 2
python-mvpa2-lib low-level implementations and bindings for PyMVPA v. 2
pynifti
python-nifti Python interface to the NIfTI I/O libraries
pyxnat
python-pyxnat Interface to access neuroimaging data on XNAT servers
slicer
libslicer3 software package for visualization and image analysis - runtime
libslicer3-dev software package for visualization and image analysis - development
slicer software package for visualization and image analysis - main application
slicer-data software package for visualization and image analysis - share
spm8
matlab-spm8 analysis of brain imaging data sequences for Matlab
spm8-common analysis of brain imaging data sequences
spm8-data data files for SPM8
spm8-doc manual for SPM8
statsmodels
python-scikits.statsmodels transitional compatibility package for statsmodels migration
python-statsmodels Python module for the estimation of statistical models
python-statsmodels-doc documentation and examples for statsmodels
python-statsmodels-lib low-level implementations and bindings for statsmodels
voxbo
voxbo processing, statistical analysis, and display of brain imaging data
The source code for this portal is licensed under the GPL-3 and is available on GitHub.