| afni |
|
|
|
afni |
toolkit for analyzing and visualizing functional MRI data |
|
|
afni-common |
miscellaneous scripts and data files for AFNI |
|
|
afni-dbg |
debug symbols for AFNI |
|
|
afni-dev |
header and static libraries for AFNI plugin development |
| ants |
|
|
|
ants |
advanced normalization tools for brain and image analysis |
| arno-iptables-firewall |
|
|
|
arno-iptables-firewall |
single- and multi-homed firewall script with DSL/ADSL support |
| autotools-dev |
|
|
|
autotools-dev |
Update infrastructure for config.{guess,sub} files |
| biosig4c++ |
|
|
|
biosig-tools |
format conversion tools for biomedical data formats |
|
|
libbiosig-dev |
I/O library for biomedical data - development files |
|
|
libbiosig1 |
I/O library for biomedical data - dynamic library |
|
|
libbiosig1-dbg |
I/O library for biomedical data - debug symbols |
|
|
octave-biosig |
Octave bindings for BioSig library |
|
|
python-biosig |
Python bindings for BioSig library |
| brian |
|
|
|
python-brian |
simulator for spiking neural networks |
|
|
python-brian-doc |
simulator for spiking neural networks - documentation |
|
|
python-brian-lib |
simulator for spiking neural networks -- extensions |
| caret |
|
|
|
caret |
Computerized Anatomical Reconstruction and Editing Toolkit |
| cctools |
|
|
|
coop-computing-tools |
cooperative computing tools |
|
|
coop-computing-tools-dev |
libraries and header files for coop-computing-tools |
|
|
coop-computing-tools-doc |
documentation for coop-computing-tools |
|
|
python-workqueue |
cooperative computing tools work queue Python bindings |
| cde |
|
|
|
cde |
package everything required to execute a Linux command on another computer |
| cmtk |
|
|
|
cmtk |
Computational Morphometry Toolkit |
| connectomeviewer |
|
|
|
connectomeviewer |
Interactive Analysis and Visualization for MR Connectomics |
| cython |
|
|
|
cython |
C-Extensions for Python |
|
|
cython-dbg |
C-Extensions for Python (Debug Build of Cython) |
| debian-handbook |
|
|
|
debian-handbook |
reference book for Debian users and system administrators |
| debruijn |
|
|
|
debruijn |
De Bruijn cycle generator |
| dh-autoreconf |
|
|
|
dh-autoreconf |
debhelper add-on to call autoreconf and clean up after the build |
| dicomnifti |
|
|
|
dicomnifti |
converts DICOM files into the NIfTI format |
| dipy |
|
|
|
python-dipy |
toolbox for analysis of MR diffusion imaging data |
|
|
python-dipy-doc |
toolbox for analysis of MR diffusion imaging data -- documentation |
|
|
python-dipy-lib |
toolbox for analysis of MR diffusion imaging data -- extensions |
| dmtcp |
|
|
|
dmtcp |
Checkpoint/Restart functionality for Linux processes |
|
|
dmtcp-dbg |
Debug package for dmtcp |
| drawtk |
|
|
|
libdrawtk-dev |
Library to simple and efficient 2D drawings (development files) |
|
|
libdrawtk0 |
Library to simple and efficient 2D drawings |
|
|
libdrawtk0-dbg |
Library to simple and efficient 2D drawings (debugging symbols) |
| edac-utils |
|
|
|
edac-utils |
report kernel-detected PCI and ECC RAM errors |
|
|
libedac-dev |
report kernel-detected PCI and ECC RAM errors |
|
|
libedac1 |
report kernel-detected PCI and ECC RAM errors |
|
|
libedac1-dbg |
report kernel-detected PCI and ECC RAM errors |
| eegdev |
|
|
|
eegdev-plugins-free |
Biosignal acquisition device library (free plugins) |
|
|
libeegdev-dev |
Biosignal acquisition device library (Developement files) |
|
|
libeegdev0 |
Biosignal acquisition device library |
|
|
libeegdev0-dbg |
Biosignal acquisition device library (Debugging symbols) |
| eeglab11 |
|
|
|
eeglab11-sampledata |
sample EEG data for EEGLAB tutorials |
|
|
matlab-eeglab11 |
electrophysiological data analysis |
| eegview |
|
|
|
eegview |
Software to display EEG data in realtime |
| eigen3 |
|
|
|
libeigen3-dev |
lightweight C++ template library for linear algebra |
|
|
libeigen3-doc |
eigen3 API docmentation |
| fail2ban |
|
|
|
fail2ban |
ban hosts that cause multiple authentication errors |
| freeipmi |
|
|
|
freeipmi |
GNU implementation of the IPMI protocol |
|
|
freeipmi-bmc-watchdog |
GNU implementation of the IPMI protocol - BMC watchdog |
|
|
freeipmi-common |
GNU implementation of the IPMI protocol - common files |
|
|
freeipmi-ipmidetect |
GNU IPMI - IPMI node detection tool |
|
|
freeipmi-ipmiseld |
GNU IPMI - IPMI node detection tool |
|
|
freeipmi-tools |
GNU implementation of the IPMI protocol - tools |
|
|
libfreeipmi-dev |
GNU IPMI - development package |
|
|
libfreeipmi16 |
GNU IPMI - libraries |
|
|
libipmiconsole-dev |
GNU IPMI - ipmiconsole development package |
|
|
libipmiconsole2 |
GNU IPMI - Serial-over-Lan library |
|
|
libipmidetect-dev |
GNU IPMI - ipmidetect development package |
|
|
libipmidetect0 |
GNU IPMI - IPMI node detection library |
|
|
libipmimonitoring-dev |
GNU IPMI - ipmimonitoring development package |
|
|
libipmimonitoring5a |
GNU IPMI - Sensor monitoring library |
| fsl |
|
|
|
fsl-5.0-core |
analysis tools for FMRI, MRI and DTI brain imaging |
|
|
fsl-core |
metapackage for the latest version of FSL |
| fslmeta |
|
|
|
fsl-5.0-complete |
metapackage for the entire FSL suite (tools and data) |
|
|
fsl-complete |
metapackage for the entire FSL suite (tools and data) |
| fslview |
|
|
|
fslview |
viewer for (f)MRI and DTI data |
|
|
fslview-doc |
Documentation for FSLView |
| gifticlib |
|
|
|
gifti-bin |
tools shipped with the GIFTI library |
|
|
libgiftiio-dev |
IO library for the GIFTI cortical surface data format |
|
|
libgiftiio0 |
IO library for the GIFTI cortical surface data format |
| git-annex |
|
|
|
git-annex-standalone |
manage files with git, without checking their contents into git -- standalone build |
| glew |
|
|
|
glew-utils |
OpenGL Extension Wrangler - utilities |
|
|
libglew1.9 |
OpenGL Extension Wrangler - runtime environment |
|
|
libglew1.9-dbg |
OpenGL Extension Wrangler (debugging symbols) |
|
|
libglew1.9-dev |
OpenGL Extension Wrangler - development environment |
|
|
libglewmx1.9 |
OpenGL Extension Wrangler (Multiple Rendering Contexts) |
|
|
libglewmx1.9-dbg |
OpenGL Extension Wrangler MX (debugging symbols) |
|
|
libglewmx1.9-dev |
OpenGL Extension Wrangler MX - development environment |
| gmsl |
|
|
|
gmsl |
extra functions to extend functionality of GNU Makefiles |
| guacamole-client |
|
|
|
guacamole |
HTML5 web application for accessing remote desktops |
|
|
guacamole-tomcat |
Tomcat-based Guacamole install with VNC support |
| guacamole-server |
|
|
|
guacd |
Guacamole proxy daemon |
|
|
libguac-client-rdp0 |
RDP support plugin for Guacamole |
|
|
libguac-client-ssh0 |
SSH support plugin for Guacamole |
|
|
libguac-client-vnc0 |
VNC support plugin for Guacamole |
|
|
libguac-dev |
Development headers for the core Guacamole library |
|
|
libguac5 |
Core Guacamole library used by guacd and client plugins |
| incf-nidash-oneclick |
|
|
|
incf-nidash-oneclick-clients |
utility for pushing DICOM data to the INCF datasharing server |
| isis |
|
|
|
isis-utils |
utilities for the ISIS neuroimaging data I/O framework |
|
|
libisis-core-dev |
I/O framework for neuroimaging data |
|
|
libisis-core0 |
I/O framework for neuroimaging data |
|
|
libisis-ioplugins-common |
data format plugins for the ISIS framework |
|
|
libisis-ioplugins-dicom |
dicom io plugin for the ISIS framework |
|
|
libisis-qt4-0 |
Qt4 bindings for ISIS data I/O framework |
|
|
libisis-qt4-dev |
Qt4 bindings for ISIS data I/O framework (development headers) |
|
|
python-isis |
Python bindings for ISIS data I/O framework (development headers) |
| itksnap |
|
|
|
itksnap |
semi-automatic segmentation of structures in 3D images |
| jist |
|
|
|
jist |
Java Image Science Toolkit |
| joblib |
|
|
|
python-joblib |
tools to provide lightweight pipelining in Python |
|
|
python3-joblib |
tools to provide lightweight pipelining in Python |
| klustakwik |
|
|
|
klustakwik |
automatic sorting of the samples (spikes) into clusters |
| libcgroup |
|
|
|
cgroup-bin |
Tools to control and monitor control groups |
|
|
libcgroup-dev |
Development libraries to develop applications that utilize control groups |
|
|
libcgroup1 |
Library to control and monitor control groups |
|
|
libpam-cgroup |
PAM module to move a user session into a cgroup |
| libeatmydata |
|
|
|
eatmydata |
library and utilities designed to disable fsync and friends |
| libfreenect |
|
|
|
freenect |
library for accessing Kinect device -- metapackage |
|
|
libfreenect-bin |
library for accessing Kinect device -- utilities and samples |
|
|
libfreenect-demos |
library for accessing Kinect device -- dummy package |
|
|
libfreenect-dev |
library for accessing Kinect device -- development files |
|
|
libfreenect-doc |
library for accessing Kinect device -- documentation |
|
|
libfreenect0.5 |
library for accessing Kinect device |
|
|
python-freenect |
library for accessing Kinect device -- Python bindings |
| libgdf |
|
|
|
gdf-tools |
IO library for the GDF -- helper tools |
|
|
libgdf-dev |
IO library for the GDF -- development library |
|
|
libgdf0 |
IO library for the GDF (general dataformat for biosignals) |
|
|
libgdf0-dbg |
IO library for the GDF -- debug symbols |
|
|
matlab-gdf |
IO library for the GDF -- Matlab interface |
|
|
octave-gdf |
IO library for the GDF -- Octave interface |
| libguac |
|
|
|
libguac-dev |
Development headers for the core Guacamole library |
|
|
libguac3 |
Core Guacamole library used by guacd and client plugins |
| libsvm |
|
|
|
libsvm-dev |
The LIBSVM header files |
|
|
libsvm-java |
Java API to support vector machine library |
|
|
libsvm-tools |
The LIBSVM binary tools |
|
|
libsvm3 |
library implementing support vector machines |
|
|
libsvm3-java |
Java API to support vector machine library |
|
|
python-libsvm |
Python interface for support vector machine library |
| lipsia |
|
|
|
lipsia |
analysis suite for MRI and fMRI data |
|
|
lipsia-doc |
documentation for LIPSIA |
| matlab-support |
|
|
|
matlab-support |
distro integration for local MATLAB installations |
|
|
matlab-support-dev |
helpers for packages building MATLAB toolboxes |
| mcpanel |
|
|
|
libmcpanel-dev |
Library to display multichannel data in realtime (Developement files) |
|
|
libmcpanel0 |
Library to display multichannel data in realtime |
|
|
libmcpanel0-dbg |
Library to display multichannel data in realtime (Debugging symbols) |
| mdp |
|
|
|
python-mdp |
Modular toolkit for Data Processing |
| mipav |
|
|
|
mipav |
quantitative analysis and visualization of medical images |
| mlpy |
|
|
|
python-mlpy |
high-performance Python package for predictive modeling |
|
|
python-mlpy-doc |
documention and examples for mlpy |
|
|
python-mlpy-lib |
low-level implementations and bindings for mlpy |
| mpi4py |
|
|
|
python-mpi4py |
bindings of the Message Passing Interface (MPI) standard |
|
|
python-mpi4py-dbg |
bindings of the MPI standard -- debug symbols |
|
|
python-mpi4py-doc |
bindings of the MPI standard -- documentation |
|
|
python3-mpi4py |
bindings of the Message Passing Interface (MPI) standard |
|
|
python3-mpi4py-dbg |
bindings of the MPI standard -- debug symbols |
| mriconvert |
|
|
|
mriconvert |
medical image file conversion utility |
| mricron |
|
|
|
mricron |
magnetic resonance image conversion, viewing and analysis |
|
|
mricron-data |
data files for MRIcron |
|
|
mricron-doc |
data files for MRIcron |
| mrtrix |
|
|
|
mrtrix |
diffusion-weighted MRI white matter tractography |
|
|
mrtrix-doc |
documentation for mrtrix |
| mwrap |
|
|
|
mwrap |
Octave/MATLAB mex generator |
| netselect |
|
|
|
netselect |
speed tester for choosing a fast network server |
|
|
netselect-apt |
speed tester for choosing a fast Debian mirror |
| neurodebian |
|
|
|
neurodebian |
neuroscience-oriented distribution - repository configuration |
|
|
neurodebian-archive-keyring |
neuroscience-oriented distribution - GnuPG archive keys |
|
|
neurodebian-desktop |
neuroscience-oriented distribution - desktop integration |
|
|
neurodebian-dev |
neuroscience-oriented distribution - development tools |
|
|
neurodebian-popularity-contest |
neuroscience-oriented distribution - popcon integration |
| nibabel |
|
|
|
python-nibabel |
Python bindings to various neuroimaging data formats |
|
|
python-nibabel-doc |
documentation for NiBabel |
|
|
python3-nibabel |
Python3 bindings to various neuroimaging data formats |
| nifticlib |
|
|
|
libnifti-dev |
IO libraries for the NIfTI-1 data format |
|
|
libnifti-doc |
NIfTI library API documentation |
|
|
libnifti2 |
IO libraries for the NIfTI-1 data format |
|
|
nifti-bin |
tools shipped with the NIfTI library |
| nipy |
|
|
|
python-nipy |
Analysis of structural and functional neuroimaging data |
|
|
python-nipy-doc |
documentation and examples for NiPy |
|
|
python-nipy-lib |
Analysis of structural and functional neuroimaging data |
|
|
python-nipy-lib-dbg |
Analysis of structural and functional neuroimaging data |
| nipy-suite |
|
|
|
nipy-suite |
Neuroimaging in Python |
|
|
nipy-suite-doc |
Neuroimaging in Python -- documentation |
| nitime |
|
|
|
python-nitime |
timeseries analysis for neuroscience data (nitime) |
|
|
python-nitime-doc |
timeseries analysis for neuroscience data (nitime) -- documentation |
| numdiff |
|
|
|
numdiff |
Compare similar files with numeric fields |
| odin |
|
|
|
libodin-dev |
static libraries and header for ODIN sequences |
|
|
mitools |
view, convert and perform basic maths with medical image datasets |
|
|
odin |
develop, simulate and run magnetic resonance sequences |
| openmeeg |
|
|
|
libopenmeeg-dev |
openmeeg library -- development files |
|
|
libopenmeeg1 |
library for solving EEG and MEG forward and inverse problems |
|
|
openmeeg-tools |
openmeeg library -- command line tools |
|
|
python-openmeeg |
openmeeg library -- Python bindings |
| openopt |
|
|
|
python-openopt |
Python module for numerical optimization |
| openpyxl |
|
|
|
python-openpyxl |
module to read/write OpenXML xlsx/xlsm files |
|
|
python3-openpyxl |
module to read/write OpenXML xlsx/xlsm files |
| opensesame |
|
|
|
opensesame |
graphical experiment builder for the social sciences |
| packaging-tutorial |
|
|
|
packaging-tutorial |
introduction to Debian packaging |
| parallelpython |
|
|
|
python-pp |
parallel and distributed programming toolkit for Python |
| pprocess |
|
|
|
python-pprocess |
elementary parallel programming for Python |
| psignifit3 |
|
|
|
python-pypsignifit |
psychometric analysis of psychophysics data in Python |
| psychopy |
|
|
|
psychopy |
environment for creating psychology stimuli in Python |
| psychtoolbox-3 |
|
|
|
octave-psychtoolbox-3 |
toolbox for vision research -- Octave bindings |
|
|
psychtoolbox-3-common |
toolbox for vision research -- arch/interpreter independent part |
|
|
psychtoolbox-3-dbg |
toolbox for vision research -- debug symbols for binaries |
|
|
psychtoolbox-3-lib |
toolbox for vision research -- arch-specific parts |
| psychtoolbox-3-nonfree |
|
|
|
matlab-psychtoolbox-3 |
toolbox for vision research -- Matlab bindings |
|
|
matlab-psychtoolbox-3-nonfree |
toolbox for vision research -- Matlab binary blobs |
|
|
octave-psychtoolbox-3-nonfree |
toolbox for vision research -- Octave binary blobs |
| pycharm-community-sloppy |
|
|
|
pycharm-community-sloppy |
PyCharm IDE (sloppy packaging) |
| pydicom |
|
|
|
python-dicom |
DICOM medical file reading and writing |
| pyentropy |
|
|
|
python-pyentropy |
Python module for estimation information theoretic quantities |
| pyepl |
|
|
|
python-pyepl |
module for coding psychology experiments in Python |
|
|
python-pyepl-common |
module for coding psychology experiments in Python |
| pyglet |
|
|
|
python-pyglet |
cross-platform windowing and multimedia library |
| pymvpa |
|
|
|
python-mvpa |
multivariate pattern analysis with Python |
|
|
python-mvpa-doc |
documentation and examples for PyMVPA |
|
|
python-mvpa-lib |
low-level implementations and bindings for PyMVPA |
| pymvpa2 |
|
|
|
python-mvpa2 |
multivariate pattern analysis with Python v. 2 |
|
|
python-mvpa2-doc |
documentation and examples for PyMVPA v. 2 |
|
|
python-mvpa2-lib |
low-level implementations and bindings for PyMVPA v. 2 |
| pynifti |
|
|
|
python-nifti |
Python interface to the NIfTI I/O libraries |
| pynn |
|
|
|
python-pynn |
simulator-independent specification of neuronal network models |
| pyoptical |
|
|
|
python-pyoptical |
python interface to the CRS 'OptiCAL' photometer |
| pysurfer |
|
|
|
python-surfer |
visualize Freesurfer's data in Python |
| python-networkx |
|
|
|
python-networkx |
tool to create, manipulate and study complex networks |
|
|
python-networkx-doc |
tool to create, manipulate and study complex networks - documentation |
| python-neuroshare |
|
|
|
python-neuroshare |
Python interface and tools for Neuroshare |
|
|
python-neuroshare-doc |
Python interface and tools for Neuroshare |
| python-traits |
|
|
|
python-traits4 |
Manifest typing and reactive programming for Python |
| python-tz |
|
|
|
python-tz |
Python version of the Olson timezone database |
| pyxid |
|
|
|
python-pyxid |
interface for Cedrus XID and StimTracker devices |
| pyxnat |
|
|
|
python-pyxnat |
Interface to access neuroimaging data on XNAT servers |
| rtfilter |
|
|
|
librtfilter-dev |
realtime digital filtering library (development files) |
|
|
librtfilter1 |
realtime digital filtering library |
|
|
librtfilter1-dbg |
realtime digital filtering library (debugging symbols) |
| scikit-learn |
|
|
|
python-scikits-learn |
transitional compatibility package for scikits.learn -> sklearn migration |
|
|
python-sklearn |
Python modules for machine learning and data mining |
|
|
python-sklearn-doc |
documentation and examples for scikit-learn |
|
|
python-sklearn-lib |
low-level implementations and bindings for scikit-learn |
| sigviewer |
|
|
|
sigviewer |
GUI viewer for biosignals such as EEG, EMG, and ECG |
| simplegeneric |
|
|
|
python-simplegeneric |
Simple generic functions for Python |
| sphinx |
|
|
|
python-sphinx |
tool for producing documentation for Python projects |
| spm8 |
|
|
|
matlab-spm8 |
analysis of brain imaging data sequences for Matlab |
|
|
spm8-common |
analysis of brain imaging data sequences |
|
|
spm8-data |
data files for SPM8 |
|
|
spm8-doc |
manual for SPM8 |
| stabilitycalc |
|
|
|
stabilitycalc |
evaluate fMRI scanner stability |
| statsmodels |
|
|
|
python-scikits.statsmodels |
transitional compatibility package for statsmodels migration |
|
|
python-statsmodels |
Python module for the estimation of statistical models |
|
|
python-statsmodels-doc |
documentation and examples for statsmodels |
|
|
python-statsmodels-lib |
low-level implementations and bindings for statsmodels |
| stimfit |
|
|
|
python-stfio |
Python module to read common electrophysiology file formats. |
|
|
stimfit |
Program for viewing and analyzing electrophysiological data |
|
|
stimfit-dbg |
Debug symbols for stimfit |
| svgtune |
|
|
|
svgtune |
tool to generate a set of .svg files out of a single .svg file |
| sympy |
|
|
|
python-sympy |
Computer Algebra System (CAS) in Python |
| testkraut |
|
|
|
testkraut |
test and evaluate heterogeneous data processing pipelines |
| underscore |
|
|
|
libjs-underscore |
JavaScript's functional programming helper library |
| via |
|
|
|
libvia-dev |
library for volumetric image analysis |
|
|
libvia-doc |
VIA library API documentation |
|
|
libvia2 |
library for volumetric image analysis |
|
|
via-bin |
tools for volumetric image analysis |
| vmri-nonfree |
|
|
|
virtual-mri-nonfree |
Virtual Magnetic Resonance Imager |
| vowpal-wabbit |
|
|
|
libvw-dev |
fast and scalable online machine learning algorithm - development files |
|
|
libvw0 |
fast and scalable online machine learning algorithm - dynamic library |
|
|
vowpal-wabbit |
fast and scalable online machine learning algorithm |
|
|
vowpal-wabbit-dbg |
fast and scalable online machine learning algorithm - debug files |
|
|
vowpal-wabbit-doc |
fast and scalable online machine learning algorithm - documentation |
| voxbo |
|
|
|
voxbo |
processing, statistical analysis, and display of brain imaging data |
| vrpn |
|
|
|
libvrpn-dev |
Virtual Reality Peripheral Network (development files) |
|
|
libvrpn0 |
Virtual Reality Peripheral Network (client library) |
|
|
libvrpnserver0 |
Virtual Reality Peripheral Network (server library) |
|
|
vrpn |
Virtual Reality Peripheral Network (executables) |
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vrpn-dbg |
Virtual Reality Peripheral Network (debugging symbols) |
| xdffileio |
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libxdffileio-dev |
Library to read/write EEG data file formats (development files) |
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libxdffileio0 |
Library to read/write EEG data file formats |
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libxdffileio0-dbg |
Library to read/write EEG data file formats (debugging symbols) |
| xmhtml |
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xmhtml1 |
A Motif widget for display HTML 3.2 |
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xmhtml1-dev |
A Motif widget for display HTML 3.2 |
| xppaut |
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xppaut |
Phase Plane Plus Auto: Solves many kinds of equations |
