| afni |
|
|
|
afni |
toolkit for analyzing and visualizing functional MRI data |
|
|
afni-common |
miscellaneous scripts and data files for AFNI |
|
|
afni-dbg |
debug symbols for AFNI |
|
|
afni-dev |
header and static libraries for AFNI plugin development |
| afni-data |
|
|
|
afni-atlases |
standard space brain atlases for AFNI |
| aghermann |
|
|
|
aghermann |
Sleep-research experiment manager |
| ants |
|
|
|
ants |
advanced normalization tools for brain and image analysis |
| arno-iptables-firewall |
|
|
|
arno-iptables-firewall |
single- and multi-homed firewall script with DSL/ADSL support |
| autotools-dev |
|
|
|
autotools-dev |
Update infrastructure for config.{guess,sub} files |
| bats |
|
|
|
bats |
bash automated testing system |
| biosig4c++ |
|
|
|
biosig-tools |
format conversion tools for biomedical data formats |
|
|
libbiosig-dev |
I/O library for biomedical data - development files |
|
|
libbiosig1 |
I/O library for biomedical data - dynamic library |
|
|
libbiosig1-dbg |
I/O library for biomedical data - debug symbols |
|
|
octave-biosig |
Octave bindings for BioSig library |
|
|
python-biosig |
Python bindings for BioSig library |
| brian |
|
|
|
python-brian |
simulator for spiking neural networks |
|
|
python-brian-doc |
simulator for spiking neural networks - documentation |
|
|
python-brian-lib |
simulator for spiking neural networks -- extensions |
| btrbk |
|
|
|
btrbk |
backup tool for btrfs volumes |
| btrfs-tools |
|
|
|
btrfs-tools |
Checksumming Copy on Write Filesystem utilities |
|
|
btrfs-tools-dbg |
Checksumming Copy on Write Filesystem utilities (debug) |
|
|
btrfs-tools-udeb |
|
| caret |
|
|
|
caret |
Computerized Anatomical Reconstruction and Editing Toolkit |
| caret-data |
|
|
|
caret-data |
common data files for Caret |
| cctools |
|
|
|
coop-computing-tools |
cooperative computing tools |
|
|
coop-computing-tools-dev |
libraries and header files for coop-computing-tools |
|
|
coop-computing-tools-doc |
documentation for coop-computing-tools |
|
|
python-workqueue |
cooperative computing tools work queue Python bindings |
| cde |
|
|
|
cde |
package everything required to execute a Linux command on another computer |
| cfflib |
|
|
|
python-cfflib |
Multi-modal connectome and metadata management and integration |
| citeproc-py |
|
|
|
python-citeproc |
Citation Style Language (CSL) processor for Python |
|
|
python3-citeproc |
Citation Style Language (CSL) processor for Python3 |
| cmtk |
|
|
|
cmtk |
Computational Morphometry Toolkit |
| cnrun |
|
|
|
cnrun-tools |
NeuroML-capable neuronal network simulator (tools) |
|
|
libcnrun2 |
NeuroML-capable neuronal network simulator (shared lib) |
|
|
libcnrun2-dev |
NeuroML-capable neuronal network simulator (development files) |
|
|
lua-cnrun |
NeuroML-capable neuronal network simulator (Lua package) |
| condor |
|
|
|
htcondor |
distributed workload management system |
|
|
htcondor-dbg |
distributed workload management system - debugging symbols |
|
|
htcondor-dev |
distributed workload management system - development files |
|
|
htcondor-doc |
distributed workload management system - documentation |
|
|
libclassad-dev |
HTCondor classads expression language - development library |
|
|
libclassad7 |
HTCondor classads expression language - runtime library |
| connectome-workbench |
|
|
|
connectome-workbench |
brain visualization, analysis and discovery tool |
|
|
connectome-workbench-dbg |
brain visualization, analysis and discovery tool -- debug symbols |
| connectomeviewer |
|
|
|
connectomeviewer |
Interactive Analysis and Visualization for MR Connectomics |
| cython |
|
|
|
cython |
C-Extensions for Python |
|
|
cython-dbg |
C-Extensions for Python (Debug Build of Cython) |
| debhelper |
|
|
|
debhelper |
helper programs for debian/rules |
| debian-handbook |
|
|
|
debian-handbook |
reference book for Debian users and system administrators |
| debootstrap |
|
|
|
debootstrap |
Bootstrap a basic Debian system |
|
|
debootstrap-udeb |
|
| debruijn |
|
|
|
debruijn |
De Bruijn cycle generator |
| dh-autoreconf |
|
|
|
dh-autoreconf |
debhelper add-on to call autoreconf and clean up after the build |
| dh-python |
|
|
|
dh-python |
Debian helper tools for packaging Python libraries and applications |
| dicomnifti |
|
|
|
dicomnifti |
converts DICOM files into the NIfTI format |
| dipy |
|
|
|
python-dipy |
toolbox for analysis of MR diffusion imaging data |
|
|
python-dipy-doc |
toolbox for analysis of MR diffusion imaging data -- documentation |
|
|
python-dipy-lib |
toolbox for analysis of MR diffusion imaging data -- extensions |
| dmtcp |
|
|
|
dmtcp |
Checkpoint/Restart functionality for Linux processes |
|
|
dmtcp-dbg |
Debug package for dmtcp |
| double-conversion |
|
|
|
libdouble-conversion-dbg |
routines to convert IEEE floats to and from strings (debugging symbols) |
|
|
libdouble-conversion-dev |
routines to convert IEEE floats to and from strings (development files) |
|
|
libdouble-conversion1 |
routines to convert IEEE floats to and from strings |
| drawtk |
|
|
|
libdrawtk-dev |
Library to simple and efficient 2D drawings (development files) |
|
|
libdrawtk0 |
Library to simple and efficient 2D drawings |
|
|
libdrawtk0-dbg |
Library to simple and efficient 2D drawings (debugging symbols) |
| edac-utils |
|
|
|
edac-utils |
report kernel-detected PCI and ECC RAM errors |
|
|
libedac-dev |
report kernel-detected PCI and ECC RAM errors |
|
|
libedac1 |
report kernel-detected PCI and ECC RAM errors |
|
|
libedac1-dbg |
report kernel-detected PCI and ECC RAM errors |
| eegdev |
|
|
|
eegdev-plugins-free |
Biosignal acquisition device library (free plugins) |
|
|
libeegdev-dev |
Biosignal acquisition device library (Developement files) |
|
|
libeegdev0 |
Biosignal acquisition device library |
|
|
libeegdev0-dbg |
Biosignal acquisition device library (Debugging symbols) |
| eeglab11 |
|
|
|
eeglab11-sampledata |
sample EEG data for EEGLAB tutorials |
|
|
matlab-eeglab11 |
electrophysiological data analysis |
| eegview |
|
|
|
eegview |
Software to display EEG data in realtime |
| eigen3 |
|
|
|
libeigen3-dev |
lightweight C++ template library for linear algebra |
|
|
libeigen3-doc |
eigen3 API docmentation |
| fail2ban |
|
|
|
fail2ban |
ban hosts that cause multiple authentication errors |
| fis-gtm |
|
|
|
fis-gtm |
metapackage for the latest version of FIS-GT.M database |
|
|
fis-gtm-6.0-003 |
package for FIS-GT.M database |
| freeipmi |
|
|
|
freeipmi |
GNU implementation of the IPMI protocol |
|
|
freeipmi-bmc-watchdog |
GNU implementation of the IPMI protocol - BMC watchdog |
|
|
freeipmi-common |
GNU implementation of the IPMI protocol - common files |
|
|
freeipmi-ipmidetect |
GNU IPMI - IPMI node detection tool |
|
|
freeipmi-ipmiseld |
GNU IPMI - IPMI node detection tool |
|
|
freeipmi-tools |
GNU implementation of the IPMI protocol - tools |
|
|
libfreeipmi-dev |
GNU IPMI - development package |
|
|
libfreeipmi16 |
GNU IPMI - libraries |
|
|
libipmiconsole-dev |
GNU IPMI - ipmiconsole development package |
|
|
libipmiconsole2 |
GNU IPMI - Serial-over-Lan library |
|
|
libipmidetect-dev |
GNU IPMI - ipmidetect development package |
|
|
libipmidetect0 |
GNU IPMI - IPMI node detection library |
|
|
libipmimonitoring-dev |
GNU IPMI - ipmimonitoring development package |
|
|
libipmimonitoring5a |
GNU IPMI - Sensor monitoring library |
| fsl |
|
|
|
fsl-5.0-core |
analysis tools for FMRI, MRI and DTI brain imaging |
|
|
fsl-core |
metapackage for the latest version of FSL |
| fsl-feeds |
|
|
|
fsl-feeds |
FSL Evaluation and Example Data Suite |
| fsldata |
|
|
|
fsl-5.0-doc-wiki |
FSL documentation wiki |
|
|
fsl-atlases |
FSL's MNI152 standard space stereotaxic brain atlases |
|
|
fsl-bangor-cerebellar-atlas |
probabilistic atlas of the human cerebellum |
|
|
fsl-first-data |
model data for FIRST subcortical brain segmentation |
|
|
fsl-harvard-oxford-atlases |
probabilistic atlas of human cortical brain areas (lateralized) |
|
|
fsl-harvard-oxford-cortical-lateralized-atlas |
probabilistic atlas of human cortical and subcortical brain areas |
|
|
fsl-jhu-dti-whitematter-atlas |
human brain white-matter atlas |
|
|
fsl-juelich-histological-atlas |
brain atlas based on cyto- and myelo-architectonic segmentations |
|
|
fsl-mni-structural-atlas |
hand-segmented single-subject human brain atlas |
|
|
fsl-mni152-templates |
MNI152 stereotaxic brain templates for FSL |
|
|
fsl-oxford-striatal-atlas |
probabilistic atlas of the human brain's sub-striatal regions |
|
|
fsl-oxford-thalamic-connectivity-atlas |
probabilistic brain atlas of thalamic white-matter connectivity |
|
|
fsl-possum-data |
sequence templates for the POSSUM MRI-simulator |
|
|
fsl-resting-connectivity-parcellation-atlases |
brain parcellations based on resting state connectivity |
|
|
fsl-subthalamic-nucleus-atlas |
probabilistic subthalamic nucleus atlas |
|
|
fsl-talairach-daemon-atlas |
structural anatomy labels of the Talairach atlas |
| fslmeta |
|
|
|
fsl-5.0-complete |
metapackage for the entire FSL suite (tools and data) |
|
|
fsl-complete |
metapackage for the entire FSL suite (tools and data) |
| fslview |
|
|
|
fslview |
viewer for (f)MRI and DTI data |
|
|
fslview-doc |
Documentation for FSLView |
| garmindev |
|
|
|
qlandkartegt-garmin |
QLandkarteGT plugins to access Garmin devices |
| gcalcli |
|
|
|
gcalcli |
Google Calendar Command Line Interface |
| gccxml |
|
|
|
gccxml |
XML output extension to GCC |
|
|
libgccxml-dev |
Libraries for building extension to gccxml output |
| gifticlib |
|
|
|
gifti-bin |
tools shipped with the GIFTI library |
|
|
libgiftiio-dev |
IO library for the GIFTI cortical surface data format |
|
|
libgiftiio0 |
IO library for the GIFTI cortical surface data format |
| git-annex |
|
|
|
git-annex-standalone |
manage files with git, without checking their contents into git -- standalone build |
| glew |
|
|
|
glew-utils |
OpenGL Extension Wrangler - utilities |
|
|
libglew1.9 |
OpenGL Extension Wrangler - runtime environment |
|
|
libglew1.9-dbg |
OpenGL Extension Wrangler (debugging symbols) |
|
|
libglew1.9-dev |
OpenGL Extension Wrangler - development environment |
|
|
libglewmx1.9 |
OpenGL Extension Wrangler (Multiple Rendering Contexts) |
|
|
libglewmx1.9-dbg |
OpenGL Extension Wrangler MX (debugging symbols) |
|
|
libglewmx1.9-dev |
OpenGL Extension Wrangler MX - development environment |
| gmsl |
|
|
|
gmsl |
extra functions to extend functionality of GNU Makefiles |
| google-glog |
|
|
|
libgoogle-glog-dev |
library that implements application-level logging. |
|
|
libgoogle-glog-doc |
documentation of gloogle-glog |
|
|
libgoogle-glog0 |
library that implements application-level logging. |
| guacamole |
|
|
|
guacamole |
HTML5 web application for accessing remote desktops |
|
|
guacamole-tomcat |
Tomcat-based Guacamole install with VNC support |
| guacamole-client |
|
|
|
guacamole |
HTML5 web application for accessing remote desktops |
|
|
guacamole-tomcat |
Tomcat-based Guacamole install with VNC support |
| guacamole-server |
|
|
|
guacd |
Guacamole proxy daemon |
|
|
libguac-client-rdp0 |
RDP support plugin for Guacamole |
|
|
libguac-client-ssh0 |
SSH support plugin for Guacamole |
|
|
libguac-client-vnc0 |
VNC support plugin for Guacamole |
|
|
libguac-dev |
Development headers for the core Guacamole library |
|
|
libguac5 |
Core Guacamole library used by guacd and client plugins |
| guacd |
|
|
|
guacd |
Guacamole proxy daemon |
| haxby2001 |
|
|
|
haxby2001-faceobject |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject1 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject2 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject3 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject4 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject5 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject6 |
face and object processing in ventral temporal cortex (fMRI) |
| impressive |
|
|
|
impressive |
PDF presentation tool with eye candies |
| incf-nidash-oneclick |
|
|
|
incf-nidash-oneclick-clients |
utility for pushing DICOM data to the INCF datasharing server |
| init-system-helpers |
|
|
|
dh-systemd |
debhelper add-on to handle systemd unit files |
|
|
init-system-helpers |
helper tools for all init systems |
| insighttoolkit4 |
|
|
|
insighttoolkit4-examples |
Image processing toolkit for registration and segmentation - examples |
|
|
insighttoolkit4-python |
Image processing toolkit for registration and segmentation - Python bindings |
|
|
libinsighttoolkit4-dbg |
Debugging information for the Insight Toolkit |
|
|
libinsighttoolkit4-dev |
Image processing toolkit for registration and segmentation - development |
|
|
libinsighttoolkit4.7 |
Image processing toolkit for registration and segmentation - runtime |
| ipython01x |
|
|
|
ipython01x |
enhanced interactive Python shell |
|
|
ipython01x-doc |
enhanced interactive Python shell |
|
|
ipython01x-notebook |
enhanced interactive Python shell -- notebook dummy package |
|
|
ipython01x-parallel |
enhanced interactive Python shell |
|
|
ipython01x-qtconsole |
enhanced interactive Python shell -- notebook dummy package |
| ipython1x |
|
|
|
ipython1x |
enhanced interactive Python shell |
|
|
ipython1x-doc |
enhanced interactive Python shell |
|
|
ipython1x-notebook |
enhanced interactive Python shell -- notebook dummy package |
|
|
ipython1x-parallel |
enhanced interactive Python shell |
|
|
ipython1x-qtconsole |
enhanced interactive Python shell -- notebook dummy package |
| ipython2x |
|
|
|
ipython2x |
enhanced interactive Python shell |
|
|
ipython2x-doc |
enhanced interactive Python shell |
| isis |
|
|
|
isis-utils |
utilities for the ISIS neuroimaging data I/O framework |
|
|
libisis-core-dev |
I/O framework for neuroimaging data |
|
|
libisis-core0 |
I/O framework for neuroimaging data |
|
|
libisis-ioplugins-common |
data format plugins for the ISIS framework |
|
|
libisis-ioplugins-dicom |
dicom io plugin for the ISIS framework |
|
|
libisis-qt4-0 |
Qt4 bindings for ISIS data I/O framework |
|
|
libisis-qt4-dev |
Qt4 bindings for ISIS data I/O framework (development headers) |
|
|
python-isis |
Python bindings for ISIS data I/O framework (development headers) |
| itksnap |
|
|
|
itksnap |
semi-automatic segmentation of structures in 3D images |
| jdcal |
|
|
|
python-jdcal |
Julian dates from proleptic Gregorian and Julian calendars |
|
|
python3-jdcal |
Julian dates from proleptic Gregorian and Julian calendars |
| jist |
|
|
|
jist |
Java Image Science Toolkit |
| joblib |
|
|
|
python-joblib |
tools to provide lightweight pipelining in Python |
|
|
python3-joblib |
tools to provide lightweight pipelining in Python |
| kbibtex |
|
|
|
kbibtex |
BibTeX editor for KDE |
| klustakwik |
|
|
|
klustakwik |
automatic sorting of the samples (spikes) into clusters |
| lazyarray |
|
|
|
python-lazyarray |
Python module providing a NumPy-compatible lazily-evaluated array |
| lda |
|
|
|
python-lda |
Topic modeling with latent Dirichlet allocation for Python 3 |
|
|
python3-lda |
Topic modeling with latent Dirichlet allocation |
| libcgroup |
|
|
|
cgroup-bin |
Tools to control and monitor control groups |
|
|
libcgroup-dev |
Development libraries to develop applications that utilize control groups |
|
|
libcgroup1 |
Library to control and monitor control groups |
|
|
libpam-cgroup |
PAM module to move a user session into a cgroup |
| libeatmydata |
|
|
|
eatmydata |
library and utilities designed to disable fsync and friends |
| libfreenect |
|
|
|
freenect |
library for accessing Kinect device -- metapackage |
|
|
libfreenect-bin |
library for accessing Kinect device -- utilities and samples |
|
|
libfreenect-demos |
library for accessing Kinect device -- dummy package |
|
|
libfreenect-dev |
library for accessing Kinect device -- development files |
|
|
libfreenect-doc |
library for accessing Kinect device -- documentation |
|
|
libfreenect0.5 |
library for accessing Kinect device |
|
|
python-freenect |
library for accessing Kinect device -- Python bindings |
| libgdf |
|
|
|
gdf-tools |
IO library for the GDF -- helper tools |
|
|
libgdf-dev |
IO library for the GDF -- development library |
|
|
libgdf0 |
IO library for the GDF (general dataformat for biosignals) |
|
|
libgdf0-dbg |
IO library for the GDF -- debug symbols |
|
|
matlab-gdf |
IO library for the GDF -- Matlab interface |
|
|
octave-gdf |
IO library for the GDF -- Octave interface |
| libguac |
|
|
|
libguac-dev |
Development headers for the core Guacamole library |
|
|
libguac3 |
Core Guacamole library used by guacd and client plugins |
| libguac-client-vnc |
|
|
|
libguac-client-vnc0 |
VNC support plugin for Guacamole |
| libmialm |
|
|
|
libmialm-dev |
Development files for the MIA landmark library |
|
|
libmialm-doc |
Documentation for the MIA landmark library |
|
|
libmialm3 |
Landmark handling for the MIA tool chain |
|
|
libmialm3-dbg |
Debug information for the MIA landmark library |
| libpgm |
|
|
|
libpgm-5.1-0 |
OpenPGM shared library |
|
|
libpgm-dbg |
OpenPGM debugging symbols |
|
|
libpgm-dev |
OpenPGM development files |
| libsvm |
|
|
|
libsvm-dev |
The LIBSVM header files |
|
|
libsvm-java |
Java API to support vector machine library |
|
|
libsvm-tools |
The LIBSVM binary tools |
|
|
libsvm3 |
library implementing support vector machines |
|
|
libsvm3-java |
Java API to support vector machine library |
|
|
python-libsvm |
Python interface for support vector machine library |
| libusb-1.0 |
|
|
|
libusb-1.0-0 |
userspace USB programming library |
|
|
libusb-1.0-0-dbg |
userspace USB programming library development files |
|
|
libusb-1.0-0-dev |
userspace USB programming library development files |
|
|
libusb-1.0-0-udeb |
|
|
|
libusb-1.0-doc |
documentation for userspace USB programming |
| libvistaio |
|
|
|
libvistaio-dev |
Development files for the libvistaio library |
|
|
libvistaio14 |
Library for loading and storing various types of binary data |
|
|
libvistaio14-dbg |
Debug information for the libvistaio library |
| lipsia |
|
|
|
lipsia |
analysis suite for MRI and fMRI data |
|
|
lipsia-doc |
documentation for LIPSIA |
| matlab-support |
|
|
|
matlab-support |
distro integration for local MATLAB installations |
|
|
matlab-support-dev |
helpers for packages building MATLAB toolboxes |
| mclaren-rhesus-macaque-atlas |
|
|
|
mclaren-rhesus-macaque-atlas |
MRI-based brain atlas of the rhesus macaque monkey |
| mcpanel |
|
|
|
libmcpanel-dev |
Library to display multichannel data in realtime (Developement files) |
|
|
libmcpanel0 |
Library to display multichannel data in realtime |
|
|
libmcpanel0-dbg |
Library to display multichannel data in realtime (Debugging symbols) |
| mdp |
|
|
|
python-mdp |
Modular toolkit for Data Processing |
| melview |
|
|
|
fsl-melview |
viewer for the output of FSL's MELODIC |
| mia |
|
|
|
libmia-2.0-8 |
library for 2D and 3D gray scale image processing |
|
|
libmia-2.0-8-dbg |
Debug information for the MIA library |
|
|
libmia-2.0-dev |
library for 2D and 3D gray scale image processing, development files |
|
|
libmia-2.0-doc |
library for 2D and 3D gray scale image processing, documentation |
|
|
mia-tools |
Command line tools for gray scale image processing |
|
|
mia-tools-dbg |
Debugging information for the MIA command line tools |
|
|
mia-tools-doc |
Cross-referenced documentation of the MIA command line tools |
| mialmpick |
|
|
|
mialmpick |
Tools for landmark picking in 3D volume data sets |
|
|
mialmpick-dbg |
Debug information landmark picking tool mialmpick |
| mipav |
|
|
|
mipav |
quantitative analysis and visualization of medical images |
| mlpy |
|
|
|
python-mlpy |
high-performance Python package for predictive modeling |
|
|
python-mlpy-doc |
documention and examples for mlpy |
|
|
python-mlpy-lib |
low-level implementations and bindings for mlpy |
| mni-colin27 |
|
|
|
mni-colin27-minc |
Talairach stereotaxic space template |
|
|
mni-colin27-nifti |
Talairach stereotaxic space template |
| mni-icbm152-nlin |
|
|
|
mni-icbm152-nlin-2009a |
MNI stereotaxic space human brain template |
|
|
mni-icbm152-nlin-2009b |
MNI stereotaxic space human brain template |
|
|
mni-icbm152-nlin-2009c |
MNI stereotaxic space human brain template |
| modules |
|
|
|
environment-modules |
Modular system for handling environment variables |
| mpi4py |
|
|
|
python-mpi4py |
bindings of the Message Passing Interface (MPI) standard |
|
|
python-mpi4py-dbg |
bindings of the MPI standard -- debug symbols |
|
|
python-mpi4py-doc |
bindings of the MPI standard -- documentation |
|
|
python3-mpi4py |
bindings of the Message Passing Interface (MPI) standard |
|
|
python3-mpi4py-dbg |
bindings of the MPI standard -- debug symbols |
| mriconvert |
|
|
|
mriconvert |
medical image file conversion utility |
| mricron |
|
|
|
mricron |
magnetic resonance image conversion, viewing and analysis |
|
|
mricron-data |
data files for MRIcron |
|
|
mricron-doc |
data files for MRIcron |
| mrtrix |
|
|
|
mrtrix |
diffusion-weighted MRI white matter tractography |
|
|
mrtrix-doc |
documentation for mrtrix |
| msgpack-python |
|
|
|
python-msgpack |
Python implementation of MessagePack format |
|
|
python3-msgpack |
Python 3 implementation of MessagePack format |
| mwrap |
|
|
|
mwrap |
Octave/MATLAB mex generator |
| neo |
|
|
|
python-neo |
Python IO library for electrophysiological data formats |
| netselect |
|
|
|
netselect |
speed tester for choosing a fast network server |
|
|
netselect-apt |
speed tester for choosing a fast Debian mirror |
| neurodebian |
|
|
|
neurodebian |
neuroscience-oriented distribution - repository configuration |
|
|
neurodebian-archive-keyring |
neuroscience-oriented distribution - GnuPG archive keys |
|
|
neurodebian-desktop |
neuroscience-oriented distribution - desktop integration |
|
|
neurodebian-dev |
neuroscience-oriented distribution - development tools |
|
|
neurodebian-popularity-contest |
neuroscience-oriented distribution - popcon integration |
| neurosynth |
|
|
|
python-neurosynth |
large-scale synthesis of functional neuroimaging data |
| neurosynth-data |
|
|
|
fsl-neurosynth-atlas |
neurosynth - atlas for use with FSL, all 525 terms |
|
|
fsl-neurosynth-top100-atlas |
neurosynth - atlas for use with FSL, top 100 terms |
|
|
neurosynth-dataset |
neurosynth - dataset of extracted terms and activations |
| nibabel |
|
|
|
python-nibabel |
Python bindings to various neuroimaging data formats |
|
|
python-nibabel-doc |
documentation for NiBabel |
|
|
python3-nibabel |
Python3 bindings to various neuroimaging data formats |
| nibabel-snapshot |
|
|
|
python-nibabel-snapshot |
Python bindings to various neuroimaging data formats |
| nifti2dicom |
|
|
|
nifti2dicom |
convert 3D medical images to DICOM 2D series |
|
|
nifti2dicom-data |
data files for nifti2dicom |
|
|
qnifti2dicom |
convert 3D medical images to DICOM 2D series (gui) |
| nifticlib |
|
|
|
libnifti-dev |
IO libraries for the NIfTI-1 data format |
|
|
libnifti-doc |
NIfTI library API documentation |
|
|
libnifti2 |
IO libraries for the NIfTI-1 data format |
|
|
nifti-bin |
tools shipped with the NIfTI library |
| nilearn |
|
|
|
python-nilearn |
fast and easy statistical learning on neuroimaging data |
| nipy |
|
|
|
python-nipy |
Analysis of structural and functional neuroimaging data |
|
|
python-nipy-doc |
documentation and examples for NiPy |
|
|
python-nipy-lib |
Analysis of structural and functional neuroimaging data |
|
|
python-nipy-lib-dbg |
Analysis of structural and functional neuroimaging data |
| nipy-suite |
|
|
|
nipy-suite |
Neuroimaging in Python |
|
|
nipy-suite-doc |
Neuroimaging in Python -- documentation |
| nipype |
|
|
|
python-nipype |
Neuroimaging data analysis pipelines in Python |
|
|
python-nipype-doc |
Neuroimaging data analysis pipelines in Python -- documentation |
| nitime |
|
|
|
python-nitime |
timeseries analysis for neuroscience data (nitime) |
|
|
python-nitime-doc |
timeseries analysis for neuroscience data (nitime) -- documentation |
| nlopt |
|
|
|
libnlopt-dev |
nonlinear optimization library -- development package |
|
|
libnlopt-guile0 |
nonlinear optimization library -- Guile bindings |
|
|
libnlopt0 |
nonlinear optimization library |
|
|
octave-nlopt |
nonlinear optimization library -- GNU Octave package |
|
|
python-nlopt |
nonlinear optimization library -- Python bindings |
| nuitka |
|
|
|
nuitka |
Python compiler with full language support and CPython compatibility |
| numdiff |
|
|
|
numdiff |
Compare similar files with numeric fields |
| numexpr |
|
|
|
python-numexpr |
Fast numerical array expression evaluator for Python and NumPy |
|
|
python-numexpr-dbg |
Fast numerical array expression evaluator for Python and NumPy (debug ext) |
|
|
python3-numexpr |
Fast numerical array expression evaluator for Python 3 and NumPy |
|
|
python3-numexpr-dbg |
Fast numerical array expression evaluator for Python 3 and NumPy (debug ext) |
| numpydoc |
|
|
|
python-numpydoc |
Sphinx extension to support docstrings in Numpy format |
| odin |
|
|
|
libodin-dev |
static libraries and header for ODIN sequences |
|
|
mitools |
view, convert and perform basic maths with medical image datasets |
|
|
odin |
develop, simulate and run magnetic resonance sequences |
| openelectrophy |
|
|
|
openelectrophy |
data analysis framework for intra- and extra-cellular recordings |
|
|
python-pyssdh |
data analysis framework for intra- and extra-cellular recordings |
| openmeeg |
|
|
|
libopenmeeg-dev |
openmeeg library -- development files |
|
|
libopenmeeg1 |
library for solving EEG and MEG forward and inverse problems |
|
|
openmeeg-tools |
openmeeg library -- command line tools |
|
|
python-openmeeg |
openmeeg library -- Python bindings |
| openopt |
|
|
|
python-openopt |
Python module for numerical optimization |
| openpyxl |
|
|
|
python-openpyxl |
module to read/write OpenXML xlsx/xlsm files |
|
|
python3-openpyxl |
module to read/write OpenXML xlsx/xlsm files |
| opensesame |
|
|
|
opensesame |
graphical experiment builder for the social sciences |
| openvibe |
|
|
|
openvibe-bin |
Software platform for BCI (tools and demos) |
|
|
openvibe-data |
Software platform for BCI (Data files) |
|
|
openvibe-dev |
Software platform for BCI (development files) |
|
|
openvibe-libs |
Software platform for BCI (shared libraries) |
|
|
openvibe-plugins |
Software platform for BCI (plugins) |
| openwalnut |
|
|
|
libopenwalnut1 |
Framework for multi-modal medical and brain data visualization |
|
|
libopenwalnut1-dev |
Development files for the OpenWalnut visualization framework |
|
|
libopenwalnut1-doc |
Developer documentation for the OpenWalnut visualization framework |
|
|
openwalnut-modules |
Loaders, algorithms and visualization modules for OpenWalnut |
|
|
openwalnut-qt4 |
Qt based user interface for OpenWalnut |
| ordereddict |
|
|
|
python-ordereddict |
big-oh performance that matches regular dictionaries |
| orthanc |
|
|
|
liborthancclient-dev |
Orthanc Client development files |
|
|
liborthancclient-doc |
Orthanc Client documentation |
|
|
liborthancclient0.7 |
Orthanc Client runtime library |
|
|
orthanc |
RESTful DICOM server for healthcare and medical research |
| packaging-tutorial |
|
|
|
packaging-tutorial |
introduction to Debian packaging |
| pandas |
|
|
|
python-pandas |
data structures for "relational" or "labeled" data |
|
|
python-pandas-doc |
documentation and examples for pandas |
|
|
python-pandas-lib |
low-level implementations and bindings for pandas |
|
|
python3-pandas |
data structures for "relational" or "labeled" data - Python 3 |
|
|
python3-pandas-lib |
low-level implementations and bindings for pandas - Python 3 |
| parallelpython |
|
|
|
python-pp |
parallel and distributed programming toolkit for Python |
| patool |
|
|
|
patool |
command line archive file manager |
| patsy |
|
|
|
python-patsy |
statistical models in Python using symbolic formulas |
|
|
python-patsy-doc |
documentation and examples for patsy |
|
|
python3-patsy |
statistical models in Python using symbolic formulas |
| pprocess |
|
|
|
python-pprocess |
elementary parallel programming for Python |
| psignifit |
|
|
|
python-pypsignifit |
psychometric analysis of psychophysics data in Python |
| psignifit3 |
|
|
|
python-pypsignifit |
psychometric analysis of psychophysics data in Python |
| psychopy |
|
|
|
psychopy |
environment for creating psychology stimuli in Python |
| psychtoolbox-3 |
|
|
|
octave-psychtoolbox-3 |
toolbox for vision research -- Octave bindings |
|
|
psychtoolbox-3-common |
toolbox for vision research -- arch/interpreter independent part |
|
|
psychtoolbox-3-dbg |
toolbox for vision research -- debug symbols for binaries |
|
|
psychtoolbox-3-lib |
toolbox for vision research -- arch-specific parts |
| psychtoolbox-3-nonfree |
|
|
|
matlab-psychtoolbox-3 |
toolbox for vision research -- Matlab bindings |
|
|
matlab-psychtoolbox-3-nonfree |
toolbox for vision research -- Matlab binary blobs |
|
|
octave-psychtoolbox-3-nonfree |
toolbox for vision research -- Octave binary blobs |
| pycharm-community-sloppy |
|
|
|
pycharm-community-sloppy |
PyCharm IDE (sloppy packaging) |
| pydicom |
|
|
|
python-dicom |
DICOM medical file reading and writing |
| pyentropy |
|
|
|
python-pyentropy |
Python module for estimation information theoretic quantities |
| pyepl |
|
|
|
python-pyepl |
module for coding psychology experiments in Python |
|
|
python-pyepl-common |
module for coding psychology experiments in Python |
| pyglet |
|
|
|
python-pyglet |
cross-platform windowing and multimedia library |
| pymc |
|
|
|
python-pymc |
Bayesian statistical models and fitting algorithms |
|
|
python-pymc-doc |
Bayesian statistical models and fitting algorithms |
| pymvpa |
|
|
|
python-mvpa |
multivariate pattern analysis with Python |
|
|
python-mvpa-doc |
documentation and examples for PyMVPA |
|
|
python-mvpa-lib |
low-level implementations and bindings for PyMVPA |
| pymvpa2 |
|
|
|
python-mvpa2 |
multivariate pattern analysis with Python v. 2 |
|
|
python-mvpa2-doc |
documentation and examples for PyMVPA v. 2 |
|
|
python-mvpa2-lib |
low-level implementations and bindings for PyMVPA v. 2 |
| pymvpa2-tutorialdata |
|
|
|
python-mvpa2-tutorialdata |
data files for the PyMVPA tutorial |
| pynifti |
|
|
|
python-nifti |
Python interface to the NIfTI I/O libraries |
| pynn |
|
|
|
python-pynn |
simulator-independent specification of neuronal network models |
| pyoptical |
|
|
|
python-pyoptical |
python interface to the CRS 'OptiCAL' photometer |
| pysurfer |
|
|
|
python-surfer |
visualize Freesurfer's data in Python |
| pytables |
|
|
|
python-tables |
hierarchical database for Python based on HDF5 |
|
|
python-tables-data |
hierarchical database for Python based on HDF5 - test data |
|
|
python-tables-dbg |
hierarchical database for Python based on HDF5 (debug extension) |
|
|
python-tables-doc |
hierarchical database for Python based on HDF5 - documentation |
|
|
python-tables-lib |
hierarchical database for Python based on HDF5 (extension) |
|
|
python3-tables |
hierarchical database for Python3 based on HDF5 |
|
|
python3-tables-dbg |
hierarchical database for Python 3 based on HDF5 (debug extension) |
|
|
python3-tables-lib |
hierarchical database for Python3 based on HDF5 (extension) |
| pytest |
|
|
|
python-pytest |
Simple, powerful testing in Python |
|
|
python-pytest-doc |
Simple, powerful testing in Python - Documentation |
|
|
python3-pytest |
Simple, powerful testing in Python3 |
| pytest-localserver |
|
|
|
python-pytest-localserver |
py.test plugin to test server connections locally (Python 2) |
|
|
python3-pytest-localserver |
py.test plugin to test server connections locally (Python 3) |
| pytest-tornado |
|
|
|
python-pytest-tornado |
py.test plugin to test Tornado applications |
|
|
python3-pytest-tornado |
py.test plugin to test Tornado applications (Python 3) |
| python-expyriment |
|
|
|
python-expyriment |
Python library for cognitive and neuroscientific experiments |
| python-git |
|
|
|
python-git |
Python library to interact with Git repositories |
| python-gitdb |
|
|
|
python-gitdb |
pure-Python git object database |
| python-mne |
|
|
|
python-mne |
Python modules for MEG and EEG data analysis |
| python-networkx |
|
|
|
python-networkx |
tool to create, manipulate and study complex networks |
|
|
python-networkx-doc |
tool to create, manipulate and study complex networks - documentation |
| python-neuroshare |
|
|
|
python-neuroshare |
Python interface and tools for Neuroshare |
|
|
python-neuroshare-doc |
Python interface and tools for Neuroshare |
| python-psutil |
|
|
|
python-psutil |
module providing convenience functions for managing processes |
|
|
python3-psutil |
module providing convenience functions for managing processes (Python3) |
| python-py |
|
|
|
python-py |
Advanced Python development support library (Python 2) |
|
|
python3-py |
Advanced Python development support library (Python 3) |
| python-pyo |
|
|
|
python-pyo |
Python module written in C to help digital signal processing script creation |
| python-quantities |
|
|
|
python-quantities |
Library for computation of physical quantities with units, based on numpy |
| python-scipy |
|
|
|
python-scipy |
scientific tools for Python |
|
|
python-scipy-dbg |
scientific tools for Python - debugging symbols |
| python-scrapy |
|
|
|
python-scrapy |
Python web scraping and crawling framework |
|
|
python-scrapy-doc |
Python web scraping and crawling framework documentation |
| python-smmap |
|
|
|
python-smmap |
pure Python implementation of a sliding window memory map manager |
| python-tornado |
|
|
|
python-tornado |
scalable, non-blocking web server and tools |
| python-traits |
|
|
|
python-traits4 |
Manifest typing and reactive programming for Python |
| python-tz |
|
|
|
python-tz |
Python version of the Olson timezone database |
| python-w3lib |
|
|
|
python-w3lib |
Collection of web-related functions for Python (Python 2) |
|
|
python3-w3lib |
Collection of web-related functions for Python (Python 3) |
| python-werkzeug |
|
|
|
python-werkzeug |
collection of utilities for WSGI applications |
|
|
python-werkzeug-doc |
documentation for the werkzeug Python library |
|
|
python3-werkzeug |
collection of utilities for WSGI applications |
| python3-dateutil |
|
|
|
python3-dateutil |
powerful extensions to the standard datetime module in Python 3 |
| pyxid |
|
|
|
python-pyxid |
interface for Cedrus XID and StimTracker devices |
| pyxnat |
|
|
|
python-pyxnat |
Interface to access neuroimaging data on XNAT servers |
| pyzmq |
|
|
|
python-zmq |
Python bindings for 0MQ library |
|
|
python-zmq-dbg |
Python bindings for 0MQ library - debugging files |
| qlandkartegt |
|
|
|
qlandkarte |
Transitional package for QLandkarteGT |
|
|
qlandkartegt |
GPS mapping (GeoTiff and vector) and GPSr management |
| rdfind |
|
|
|
rdfind |
find duplicate files utility |
| remake |
|
|
|
remake |
GNU make fork with improved error reporting and debugging |
| rorden-mri-tutorial |
|
|
|
rorden-mri-tutorial |
Chris Rorden's MRI analysis tutorial |
|
|
rorden-mri-tutorial-data |
data files for Chris Rorden's MRI analysis tutorial |
| rtfilter |
|
|
|
librtfilter-dev |
realtime digital filtering library (development files) |
|
|
librtfilter1 |
realtime digital filtering library |
|
|
librtfilter1-dbg |
realtime digital filtering library (debugging symbols) |
| scikit-learn |
|
|
|
python-scikits-learn |
transitional compatibility package for scikits.learn -> sklearn migration |
|
|
python-sklearn |
Python modules for machine learning and data mining |
|
|
python-sklearn-doc |
documentation and examples for scikit-learn |
|
|
python-sklearn-lib |
low-level implementations and bindings for scikit-learn |
| seaborn |
|
|
|
python-seaborn |
statistical visualization library |
|
|
python3-seaborn |
statistical visualization library |
| shogun |
|
|
|
libshogun-dev |
Large Scale Machine Learning Toolbox |
|
|
libshogun11 |
Large Scale Machine Learning Toolbox |
|
|
shogun-cmdline-static |
Large Scale Machine Learning Toolbox |
|
|
shogun-csharp-modular |
Large Scale Machine Learning Toolbox |
|
|
shogun-dbg |
Large Scale Machine Learning Toolbox |
|
|
shogun-doc-cn |
Large Scale Machine Learning Toolbox |
|
|
shogun-doc-en |
Large Scale Machine Learning Toolbox |
|
|
shogun-elwms-static |
Large Scale Machine Learning Toolbox |
|
|
shogun-java-modular |
Large Scale Machine Learning Toolbox |
|
|
shogun-lua-modular |
Large Scale Machine Learning Toolbox |
|
|
shogun-python-modular |
Large Scale Machine Learning Toolbox |
|
|
shogun-python-static |
Large Scale Machine Learning Toolbox |
|
|
shogun-r-static |
Large Scale Machine Learning Toolbox |
|
|
shogun-ruby-modular |
Large Scale Machine Learning Toolbox |
| sigviewer |
|
|
|
sigviewer |
GUI viewer for biosignals such as EEG, EMG, and ECG |
| simplegeneric |
|
|
|
python-simplegeneric |
Simple generic functions for Python |
| skimage |
|
|
|
python-skimage |
Python modules for image processing |
|
|
python-skimage-doc |
Documentation and examples for scikit-image |
|
|
python-skimage-lib |
Optimized low-level algorithms for scikit-image |
|
|
python3-skimage |
Python 3 modules for image processing |
|
|
python3-skimage-lib |
Optimized low-level algorithms for Python 3 scikit-image |
| slicer |
|
|
|
libslicer3 |
software package for visualization and image analysis - runtime |
|
|
libslicer3-dev |
software package for visualization and image analysis - development |
|
|
slicer |
software package for visualization and image analysis - main application |
|
|
slicer-data |
software package for visualization and image analysis - share |
| sphinx |
|
|
|
python-sphinx |
tool for producing documentation for Python projects |
| sphinx-rtd-theme |
|
|
|
python-sphinx-rtd-theme |
sphinx theme from readthedocs.org (Python 2) |
|
|
python3-sphinx-rtd-theme |
sphinx theme from readthedocs.org (Python 3) |
| spm8 |
|
|
|
matlab-spm8 |
analysis of brain imaging data sequences for Matlab |
|
|
spm8-common |
analysis of brain imaging data sequences |
|
|
spm8-data |
data files for SPM8 |
|
|
spm8-doc |
manual for SPM8 |
| spyder |
|
|
|
python-spyderlib |
python IDE for scientists |
|
|
spyder |
python IDE for scientists |
| spykeutils |
|
|
|
python-spykeutils |
utilities for analyzing electrophysiological data |
| spykeviewer |
|
|
|
spykeviewer |
graphical utility for analyzing electrophysiological data |
| sri24-atlas |
|
|
|
sri24-atlas |
MRI-based brain atlas of normal adult human brain anatomy |
| stabilitycalc |
|
|
|
stabilitycalc |
evaluate fMRI scanner stability |
| statsmodels |
|
|
|
python-scikits.statsmodels |
transitional compatibility package for statsmodels migration |
|
|
python-statsmodels |
Python module for the estimation of statistical models |
|
|
python-statsmodels-doc |
documentation and examples for statsmodels |
|
|
python-statsmodels-lib |
low-level implementations and bindings for statsmodels |
| stimfit |
|
|
|
python-stfio |
Python module to read common electrophysiology file formats. |
|
|
stimfit |
Program for viewing and analyzing electrophysiological data |
|
|
stimfit-dbg |
Debug symbols for stimfit |
| svgtune |
|
|
|
svgtune |
tool to generate a set of .svg files out of a single .svg file |
| sympy |
|
|
|
python-sympy |
Computer Algebra System (CAS) in Python |
| testkraut |
|
|
|
testkraut |
test and evaluate heterogeneous data processing pipelines |
| tigervnc |
|
|
|
tigervnc-common |
Virtual network computing; Common software needed by clients and servers |
|
|
tigervnc-scraping-server |
Virtual network computing server software |
|
|
tigervnc-standalone-server |
Virtual network computing server software |
|
|
tigervnc-viewer |
Virtual network computing client software for X |
|
|
tigervnc-xorg-extension |
Virtual network computing server software |
| ubuntu-keyring |
|
|
|
ubuntu-keyring |
GnuPG keys of the Ubuntu archive |
|
|
ubuntu-keyring-udeb |
|
| underscore |
|
|
|
libjs-underscore |
JavaScript's functional programming helper library |
| utopia-documents |
|
|
|
utopia-documents |
PDF reader that displays interactive annotations on scientific articles. |
|
|
utopia-documents-dbg |
debugging symbols for utopia-documents |
| via |
|
|
|
libvia-dev |
library for volumetric image analysis |
|
|
libvia-doc |
VIA library API documentation |
|
|
libvia2 |
library for volumetric image analysis |
|
|
via-bin |
tools for volumetric image analysis |
| visionegg |
|
|
|
python-visionegg |
Python library for 2D/3D visual stimulus generation |
| vmri-nonfree |
|
|
|
virtual-mri-nonfree |
Virtual Magnetic Resonance Imager |
| vowpal-wabbit |
|
|
|
libvw-dev |
fast and scalable online machine learning algorithm - development files |
|
|
libvw0 |
fast and scalable online machine learning algorithm - dynamic library |
|
|
vowpal-wabbit |
fast and scalable online machine learning algorithm |
|
|
vowpal-wabbit-dbg |
fast and scalable online machine learning algorithm - debug files |
|
|
vowpal-wabbit-doc |
fast and scalable online machine learning algorithm - documentation |
| voxbo |
|
|
|
voxbo |
processing, statistical analysis, and display of brain imaging data |
| vrpn |
|
|
|
libvrpn-dev |
Virtual Reality Peripheral Network (development files) |
|
|
libvrpn0 |
Virtual Reality Peripheral Network (client library) |
|
|
libvrpnserver0 |
Virtual Reality Peripheral Network (server library) |
|
|
vrpn |
Virtual Reality Peripheral Network (executables) |
|
|
vrpn-dbg |
Virtual Reality Peripheral Network (debugging symbols) |
| vtk |
|
|
|
libvtk-java |
Visualization Toolkit - A high level 3D visualization library - java |
|
|
libvtk5-dev |
VTK header files for building C++ code |
|
|
libvtk5-qt4-dev |
Visualization Toolkit - A high level 3D visualization library - Qt devel |
|
|
libvtk5.8 |
Visualization Toolkit - A high level 3D visualization library - runtime |
|
|
libvtk5.8-qt4 |
Visualization Toolkit - A high level 3D visualization library - Qt runtime |
|
|
python-vtk |
Python bindings for VTK |
|
|
tcl-vtk |
Tcl bindings for VTK |
|
|
vtk-doc |
VTK class reference documentation |
|
|
vtk-examples |
C++, Tcl and Python example programs/scripts for VTK |
| vtk-dicom |
|
|
|
libvtk-dicom-java |
DICOM for VTK - java |
|
|
libvtk-dicom0.5 |
DICOM for VTK - lib |
|
|
libvtk-dicom0.5-dev |
DICOM for VTK - dev |
|
|
python-vtk-dicom |
DICOM for VTK - python |
|
|
vtk-dicom-tools |
DICOM for VTK - tools |
| xdffileio |
|
|
|
libxdffileio-dev |
Library to read/write EEG data file formats (development files) |
|
|
libxdffileio0 |
Library to read/write EEG data file formats |
|
|
libxdffileio0-dbg |
Library to read/write EEG data file formats (debugging symbols) |
| xmhtml |
|
|
|
xmhtml1 |
A Motif widget for display HTML 3.2 |
|
|
xmhtml1-dev |
A Motif widget for display HTML 3.2 |
| xppaut |
|
|
|
xppaut |
Phase Plane Plus Auto: Solves many kinds of equations |
| zeromq |
|
|
|
libzmq-dbg |
ZeroMQ lightweight messaging kernel (debugging symbols) |
|
|
libzmq-dev |
ZeroMQ lightweight messaging kernel (development libraries and header files) |
|
|
libzmq1 |
ZeroMQ lightweight messaging kernel (shared library) |
