| afni |
|
|
|
afni |
toolkit for analyzing and visualizing functional MRI data |
|
|
afni-common |
miscellaneous scripts and data files for AFNI |
|
|
afni-dbg |
debug symbols for AFNI |
|
|
afni-dev |
header and static libraries for AFNI plugin development |
| afni-data |
|
|
|
afni-atlases |
standard space brain atlases for AFNI |
| ants |
|
|
|
ants |
advanced normalization tools for brain and image analysis |
| biosig4c++ |
|
|
|
biosig-tools |
format conversion tools for biomedical data formats |
|
|
libbiosig-dev |
I/O library for biomedical data - development files |
|
|
libbiosig1 |
I/O library for biomedical data - dynamic library |
|
|
libbiosig1-dbg |
I/O library for biomedical data - debug symbols |
|
|
octave-biosig |
Octave bindings for BioSig library |
|
|
python-biosig |
Python bindings for BioSig library |
| brian |
|
|
|
python-brian |
simulator for spiking neural networks |
|
|
python-brian-doc |
simulator for spiking neural networks - documentation |
|
|
python-brian-lib |
simulator for spiking neural networks -- extensions |
| caret |
|
|
|
caret |
Computerized Anatomical Reconstruction and Editing Toolkit |
| caret-data |
|
|
|
caret-data |
common data files for Caret |
| cctools |
|
|
|
coop-computing-tools |
cooperative computing tools |
|
|
coop-computing-tools-dev |
libraries and header files for coop-computing-tools |
|
|
coop-computing-tools-doc |
documentation for coop-computing-tools |
|
|
python-workqueue |
cooperative computing tools work queue Python bindings |
| cde |
|
|
|
cde |
package everything required to execute a Linux command on another computer |
| cmtk |
|
|
|
cmtk |
Computational Morphometry Toolkit |
| connectome-workbench |
|
|
|
connectome-workbench |
brain visualization, analysis and discovery tool |
|
|
connectome-workbench-dbg |
brain visualization, analysis and discovery tool -- debug symbols |
| cython |
|
|
|
cython |
C-Extensions for Python |
|
|
cython-dbg |
C-Extensions for Python (Debug Build of Cython) |
| debruijn |
|
|
|
debruijn |
De Bruijn cycle generator |
| dicomnifti |
|
|
|
dicomnifti |
converts DICOM files into the NIfTI format |
| dipy |
|
|
|
python-dipy |
toolbox for analysis of MR diffusion imaging data |
|
|
python-dipy-doc |
toolbox for analysis of MR diffusion imaging data -- documentation |
|
|
python-dipy-lib |
toolbox for analysis of MR diffusion imaging data -- extensions |
| dmtcp |
|
|
|
dmtcp |
Checkpoint/Restart functionality for Linux processes |
|
|
dmtcp-dbg |
Debug package for dmtcp |
| eeglab11 |
|
|
|
eeglab11-sampledata |
sample EEG data for EEGLAB tutorials |
|
|
matlab-eeglab11 |
electrophysiological data analysis |
| freeipmi |
|
|
|
freeipmi |
GNU implementation of the IPMI protocol |
|
|
freeipmi-bmc-watchdog |
GNU implementation of the IPMI protocol - BMC watchdog |
|
|
freeipmi-common |
GNU implementation of the IPMI protocol - common files |
|
|
freeipmi-ipmidetect |
GNU IPMI - IPMI node detection tool |
|
|
freeipmi-ipmiseld |
GNU IPMI - IPMI node detection tool |
|
|
freeipmi-tools |
GNU implementation of the IPMI protocol - tools |
|
|
libfreeipmi-dev |
GNU IPMI - development package |
|
|
libfreeipmi16 |
GNU IPMI - libraries |
|
|
libipmiconsole-dev |
GNU IPMI - ipmiconsole development package |
|
|
libipmiconsole2 |
GNU IPMI - Serial-over-Lan library |
|
|
libipmidetect-dev |
GNU IPMI - ipmidetect development package |
|
|
libipmidetect0 |
GNU IPMI - IPMI node detection library |
|
|
libipmimonitoring-dev |
GNU IPMI - ipmimonitoring development package |
|
|
libipmimonitoring5a |
GNU IPMI - Sensor monitoring library |
| fsl |
|
|
|
fsl-5.0-core |
analysis tools for FMRI, MRI and DTI brain imaging |
|
|
fsl-core |
metapackage for the latest version of FSL |
| fsl-feeds |
|
|
|
fsl-feeds |
FSL Evaluation and Example Data Suite |
| fsldata |
|
|
|
fsl-5.0-doc-wiki |
FSL documentation wiki |
|
|
fsl-atlases |
FSL's MNI152 standard space stereotaxic brain atlases |
|
|
fsl-bangor-cerebellar-atlas |
probabilistic atlas of the human cerebellum |
|
|
fsl-first-data |
model data for FIRST subcortical brain segmentation |
|
|
fsl-harvard-oxford-atlases |
probabilistic atlas of human cortical brain areas (lateralized) |
|
|
fsl-harvard-oxford-cortical-lateralized-atlas |
probabilistic atlas of human cortical and subcortical brain areas |
|
|
fsl-jhu-dti-whitematter-atlas |
human brain white-matter atlas |
|
|
fsl-juelich-histological-atlas |
brain atlas based on cyto- and myelo-architectonic segmentations |
|
|
fsl-mni-structural-atlas |
hand-segmented single-subject human brain atlas |
|
|
fsl-mni152-templates |
MNI152 stereotaxic brain templates for FSL |
|
|
fsl-oxford-striatal-atlas |
probabilistic atlas of the human brain's sub-striatal regions |
|
|
fsl-oxford-thalamic-connectivity-atlas |
probabilistic brain atlas of thalamic white-matter connectivity |
|
|
fsl-possum-data |
sequence templates for the POSSUM MRI-simulator |
|
|
fsl-resting-connectivity-parcellation-atlases |
brain parcellations based on resting state connectivity |
|
|
fsl-subthalamic-nucleus-atlas |
probabilistic subthalamic nucleus atlas |
|
|
fsl-talairach-daemon-atlas |
structural anatomy labels of the Talairach atlas |
| fslmeta |
|
|
|
fsl-5.0-complete |
metapackage for the entire FSL suite (tools and data) |
|
|
fsl-complete |
metapackage for the entire FSL suite (tools and data) |
| fslview |
|
|
|
fslview |
viewer for (f)MRI and DTI data |
|
|
fslview-doc |
Documentation for FSLView |
| gifticlib |
|
|
|
gifti-bin |
tools shipped with the GIFTI library |
|
|
libgiftiio-dev |
IO library for the GIFTI cortical surface data format |
|
|
libgiftiio0 |
IO library for the GIFTI cortical surface data format |
| haxby2001 |
|
|
|
haxby2001-faceobject |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject1 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject2 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject3 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject4 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject5 |
face and object processing in ventral temporal cortex (fMRI) |
|
|
haxby2001-faceobject-subject6 |
face and object processing in ventral temporal cortex (fMRI) |
| itksnap |
|
|
|
itksnap |
semi-automatic segmentation of structures in 3D images |
| jist |
|
|
|
jist |
Java Image Science Toolkit |
| klustakwik |
|
|
|
klustakwik |
automatic sorting of the samples (spikes) into clusters |
| libfreenect |
|
|
|
freenect |
library for accessing Kinect device -- metapackage |
|
|
libfreenect-bin |
library for accessing Kinect device -- utilities and samples |
|
|
libfreenect-demos |
library for accessing Kinect device -- dummy package |
|
|
libfreenect-dev |
library for accessing Kinect device -- development files |
|
|
libfreenect-doc |
library for accessing Kinect device -- documentation |
|
|
libfreenect0.5 |
library for accessing Kinect device |
|
|
python-freenect |
library for accessing Kinect device -- Python bindings |
| libgdf |
|
|
|
gdf-tools |
IO library for the GDF -- helper tools |
|
|
libgdf-dev |
IO library for the GDF -- development library |
|
|
libgdf0 |
IO library for the GDF (general dataformat for biosignals) |
|
|
libgdf0-dbg |
IO library for the GDF -- debug symbols |
|
|
matlab-gdf |
IO library for the GDF -- Matlab interface |
|
|
octave-gdf |
IO library for the GDF -- Octave interface |
| matlab-support |
|
|
|
matlab-support |
distro integration for local MATLAB installations |
|
|
matlab-support-dev |
helpers for packages building MATLAB toolboxes |
| mclaren-rhesus-macaque-atlas |
|
|
|
mclaren-rhesus-macaque-atlas |
MRI-based brain atlas of the rhesus macaque monkey |
| mdp |
|
|
|
python-mdp |
Modular toolkit for Data Processing |
| mipav |
|
|
|
mipav |
quantitative analysis and visualization of medical images |
| mlpy |
|
|
|
python-mlpy |
high-performance Python package for predictive modeling |
|
|
python-mlpy-doc |
documention and examples for mlpy |
|
|
python-mlpy-lib |
low-level implementations and bindings for mlpy |
| mni-colin27 |
|
|
|
mni-colin27-minc |
Talairach stereotaxic space template |
|
|
mni-colin27-nifti |
Talairach stereotaxic space template |
| mni-icbm152-nlin |
|
|
|
mni-icbm152-nlin-2009a |
MNI stereotaxic space human brain template |
|
|
mni-icbm152-nlin-2009b |
MNI stereotaxic space human brain template |
|
|
mni-icbm152-nlin-2009c |
MNI stereotaxic space human brain template |
| mpi4py |
|
|
|
python-mpi4py |
bindings of the Message Passing Interface (MPI) standard |
|
|
python-mpi4py-dbg |
bindings of the MPI standard -- debug symbols |
|
|
python-mpi4py-doc |
bindings of the MPI standard -- documentation |
|
|
python3-mpi4py |
bindings of the Message Passing Interface (MPI) standard |
|
|
python3-mpi4py-dbg |
bindings of the MPI standard -- debug symbols |
| mricron |
|
|
|
mricron |
magnetic resonance image conversion, viewing and analysis |
|
|
mricron-data |
data files for MRIcron |
|
|
mricron-doc |
data files for MRIcron |
| mrtrix |
|
|
|
mrtrix |
diffusion-weighted MRI white matter tractography |
|
|
mrtrix-doc |
documentation for mrtrix |
| neo |
|
|
|
python-neo |
Python IO library for electrophysiological data formats |
| neurodebian |
|
|
|
neurodebian |
neuroscience-oriented distribution - repository configuration |
|
|
neurodebian-archive-keyring |
neuroscience-oriented distribution - GnuPG archive keys |
|
|
neurodebian-desktop |
neuroscience-oriented distribution - desktop integration |
|
|
neurodebian-dev |
neuroscience-oriented distribution - development tools |
|
|
neurodebian-popularity-contest |
neuroscience-oriented distribution - popcon integration |
| neurosynth |
|
|
|
python-neurosynth |
large-scale synthesis of functional neuroimaging data |
| neurosynth-data |
|
|
|
fsl-neurosynth-atlas |
neurosynth - atlas for use with FSL, all 525 terms |
|
|
fsl-neurosynth-top100-atlas |
neurosynth - atlas for use with FSL, top 100 terms |
|
|
neurosynth-dataset |
neurosynth - dataset of extracted terms and activations |
| nibabel |
|
|
|
python-nibabel |
Python bindings to various neuroimaging data formats |
|
|
python-nibabel-doc |
documentation for NiBabel |
|
|
python3-nibabel |
Python3 bindings to various neuroimaging data formats |
| nifticlib |
|
|
|
libnifti-dev |
IO libraries for the NIfTI-1 data format |
|
|
libnifti-doc |
NIfTI library API documentation |
|
|
libnifti2 |
IO libraries for the NIfTI-1 data format |
|
|
nifti-bin |
tools shipped with the NIfTI library |
| nilearn |
|
|
|
python-nilearn |
fast and easy statistical learning on neuroimaging data |
| nipy |
|
|
|
python-nipy |
Analysis of structural and functional neuroimaging data |
|
|
python-nipy-doc |
documentation and examples for NiPy |
|
|
python-nipy-lib |
Analysis of structural and functional neuroimaging data |
|
|
python-nipy-lib-dbg |
Analysis of structural and functional neuroimaging data |
| nipy-suite |
|
|
|
nipy-suite |
Neuroimaging in Python |
|
|
nipy-suite-doc |
Neuroimaging in Python -- documentation |
| nipype |
|
|
|
python-nipype |
Neuroimaging data analysis pipelines in Python |
|
|
python-nipype-doc |
Neuroimaging data analysis pipelines in Python -- documentation |
| nitime |
|
|
|
python-nitime |
timeseries analysis for neuroscience data (nitime) |
|
|
python-nitime-doc |
timeseries analysis for neuroscience data (nitime) -- documentation |
| numdiff |
|
|
|
numdiff |
Compare similar files with numeric fields |
| numexpr |
|
|
|
python-numexpr |
Fast numerical array expression evaluator for Python and NumPy |
|
|
python-numexpr-dbg |
Fast numerical array expression evaluator for Python and NumPy (debug ext) |
|
|
python3-numexpr |
Fast numerical array expression evaluator for Python 3 and NumPy |
|
|
python3-numexpr-dbg |
Fast numerical array expression evaluator for Python 3 and NumPy (debug ext) |
| odin |
|
|
|
libodin-dev |
static libraries and header for ODIN sequences |
|
|
mitools |
view, convert and perform basic maths with medical image datasets |
|
|
odin |
develop, simulate and run magnetic resonance sequences |
| openelectrophy |
|
|
|
openelectrophy |
data analysis framework for intra- and extra-cellular recordings |
|
|
python-pyssdh |
data analysis framework for intra- and extra-cellular recordings |
| openmeeg |
|
|
|
libopenmeeg-dev |
openmeeg library -- development files |
|
|
libopenmeeg1 |
library for solving EEG and MEG forward and inverse problems |
|
|
openmeeg-tools |
openmeeg library -- command line tools |
|
|
python-openmeeg |
openmeeg library -- Python bindings |
| openpyxl |
|
|
|
python-openpyxl |
module to read/write OpenXML xlsx/xlsm files |
|
|
python3-openpyxl |
module to read/write OpenXML xlsx/xlsm files |
| openwalnut |
|
|
|
libopenwalnut1 |
Framework for multi-modal medical and brain data visualization |
|
|
libopenwalnut1-dev |
Development files for the OpenWalnut visualization framework |
|
|
libopenwalnut1-doc |
Developer documentation for the OpenWalnut visualization framework |
|
|
openwalnut-modules |
Loaders, algorithms and visualization modules for OpenWalnut |
|
|
openwalnut-qt4 |
Qt based user interface for OpenWalnut |
| pandas |
|
|
|
python-pandas |
data structures for "relational" or "labeled" data |
|
|
python-pandas-doc |
documentation and examples for pandas |
|
|
python-pandas-lib |
low-level implementations and bindings for pandas |
|
|
python3-pandas |
data structures for "relational" or "labeled" data - Python 3 |
|
|
python3-pandas-lib |
low-level implementations and bindings for pandas - Python 3 |
| patsy |
|
|
|
python-patsy |
statistical models in Python using symbolic formulas |
|
|
python-patsy-doc |
documentation and examples for patsy |
|
|
python3-patsy |
statistical models in Python using symbolic formulas |
| pprocess |
|
|
|
python-pprocess |
elementary parallel programming for Python |
| psychopy |
|
|
|
psychopy |
environment for creating psychology stimuli in Python |
| psychtoolbox-3 |
|
|
|
octave-psychtoolbox-3 |
toolbox for vision research -- Octave bindings |
|
|
psychtoolbox-3-common |
toolbox for vision research -- arch/interpreter independent part |
|
|
psychtoolbox-3-dbg |
toolbox for vision research -- debug symbols for binaries |
|
|
psychtoolbox-3-lib |
toolbox for vision research -- arch-specific parts |
| psychtoolbox-3-nonfree |
|
|
|
matlab-psychtoolbox-3 |
toolbox for vision research -- Matlab bindings |
|
|
matlab-psychtoolbox-3-nonfree |
toolbox for vision research -- Matlab binary blobs |
|
|
octave-psychtoolbox-3-nonfree |
toolbox for vision research -- Octave binary blobs |
| pycharm-community-sloppy |
|
|
|
pycharm-community-sloppy |
PyCharm IDE (sloppy packaging) |
| pydicom |
|
|
|
python-dicom |
DICOM medical file reading and writing |
| pyepl |
|
|
|
python-pyepl |
module for coding psychology experiments in Python |
|
|
python-pyepl-common |
module for coding psychology experiments in Python |
| pyglet |
|
|
|
python-pyglet |
cross-platform windowing and multimedia library |
| pymc |
|
|
|
python-pymc |
Bayesian statistical models and fitting algorithms |
|
|
python-pymc-doc |
Bayesian statistical models and fitting algorithms |
| pymvpa |
|
|
|
python-mvpa |
multivariate pattern analysis with Python |
|
|
python-mvpa-doc |
documentation and examples for PyMVPA |
|
|
python-mvpa-lib |
low-level implementations and bindings for PyMVPA |
| pymvpa2 |
|
|
|
python-mvpa2 |
multivariate pattern analysis with Python v. 2 |
|
|
python-mvpa2-doc |
documentation and examples for PyMVPA v. 2 |
|
|
python-mvpa2-lib |
low-level implementations and bindings for PyMVPA v. 2 |
| pymvpa2-tutorialdata |
|
|
|
python-mvpa2-tutorialdata |
data files for the PyMVPA tutorial |
| pynifti |
|
|
|
python-nifti |
Python interface to the NIfTI I/O libraries |
| pynn |
|
|
|
python-pynn |
simulator-independent specification of neuronal network models |
| pyoptical |
|
|
|
python-pyoptical |
python interface to the CRS 'OptiCAL' photometer |
| pysurfer |
|
|
|
python-surfer |
visualize Freesurfer's data in Python |
| pytables |
|
|
|
python-tables |
hierarchical database for Python based on HDF5 |
|
|
python-tables-data |
hierarchical database for Python based on HDF5 - test data |
|
|
python-tables-dbg |
hierarchical database for Python based on HDF5 (debug extension) |
|
|
python-tables-doc |
hierarchical database for Python based on HDF5 - documentation |
|
|
python-tables-lib |
hierarchical database for Python based on HDF5 (extension) |
|
|
python3-tables |
hierarchical database for Python3 based on HDF5 |
|
|
python3-tables-dbg |
hierarchical database for Python 3 based on HDF5 (debug extension) |
|
|
python3-tables-lib |
hierarchical database for Python3 based on HDF5 (extension) |
| python-mne |
|
|
|
python-mne |
Python modules for MEG and EEG data analysis |
| python-quantities |
|
|
|
python-quantities |
Library for computation of physical quantities with units, based on numpy |
| python-tornado |
|
|
|
python-tornado |
scalable, non-blocking web server and tools |
| python-traits |
|
|
|
python-traits4 |
Manifest typing and reactive programming for Python |
| pyxid |
|
|
|
python-pyxid |
interface for Cedrus XID and StimTracker devices |
| pyxnat |
|
|
|
python-pyxnat |
Interface to access neuroimaging data on XNAT servers |
| qlandkartegt |
|
|
|
qlandkarte |
Transitional package for QLandkarteGT |
|
|
qlandkartegt |
GPS mapping (GeoTiff and vector) and GPSr management |
| rorden-mri-tutorial |
|
|
|
rorden-mri-tutorial |
Chris Rorden's MRI analysis tutorial |
|
|
rorden-mri-tutorial-data |
data files for Chris Rorden's MRI analysis tutorial |
| scikit-learn |
|
|
|
python-scikits-learn |
transitional compatibility package for scikits.learn -> sklearn migration |
|
|
python-sklearn |
Python modules for machine learning and data mining |
|
|
python-sklearn-doc |
documentation and examples for scikit-learn |
|
|
python-sklearn-lib |
low-level implementations and bindings for scikit-learn |
| seaborn |
|
|
|
python-seaborn |
statistical visualization library |
|
|
python3-seaborn |
statistical visualization library |
| sigviewer |
|
|
|
sigviewer |
GUI viewer for biosignals such as EEG, EMG, and ECG |
| skimage |
|
|
|
python-skimage |
Python modules for image processing |
|
|
python-skimage-doc |
Documentation and examples for scikit-image |
|
|
python-skimage-lib |
Optimized low-level algorithms for scikit-image |
|
|
python3-skimage |
Python 3 modules for image processing |
|
|
python3-skimage-lib |
Optimized low-level algorithms for Python 3 scikit-image |
| spm8 |
|
|
|
matlab-spm8 |
analysis of brain imaging data sequences for Matlab |
|
|
spm8-common |
analysis of brain imaging data sequences |
|
|
spm8-data |
data files for SPM8 |
|
|
spm8-doc |
manual for SPM8 |
| spykeutils |
|
|
|
python-spykeutils |
utilities for analyzing electrophysiological data |
| spykeviewer |
|
|
|
spykeviewer |
graphical utility for analyzing electrophysiological data |
| sri24-atlas |
|
|
|
sri24-atlas |
MRI-based brain atlas of normal adult human brain anatomy |
| stabilitycalc |
|
|
|
stabilitycalc |
evaluate fMRI scanner stability |
| statsmodels |
|
|
|
python-scikits.statsmodels |
transitional compatibility package for statsmodels migration |
|
|
python-statsmodels |
Python module for the estimation of statistical models |
|
|
python-statsmodels-doc |
documentation and examples for statsmodels |
|
|
python-statsmodels-lib |
low-level implementations and bindings for statsmodels |
| stimfit |
|
|
|
python-stfio |
Python module to read common electrophysiology file formats. |
|
|
stimfit |
Program for viewing and analyzing electrophysiological data |
|
|
stimfit-dbg |
Debug symbols for stimfit |
| svgtune |
|
|
|
svgtune |
tool to generate a set of .svg files out of a single .svg file |
| testkraut |
|
|
|
testkraut |
test and evaluate heterogeneous data processing pipelines |
| tigervnc |
|
|
|
tigervnc-common |
Virtual network computing; Common software needed by clients and servers |
|
|
tigervnc-scraping-server |
Virtual network computing server software |
|
|
tigervnc-standalone-server |
Virtual network computing server software |
|
|
tigervnc-viewer |
Virtual network computing client software for X |
|
|
tigervnc-xorg-extension |
Virtual network computing server software |
| vmri-nonfree |
|
|
|
virtual-mri-nonfree |
Virtual Magnetic Resonance Imager |
| voxbo |
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voxbo |
processing, statistical analysis, and display of brain imaging data |
| xppaut |
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xppaut |
Phase Plane Plus Auto: Solves many kinds of equations |
