| afni |
|
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|
afni |
toolkit for analyzing and visualizing functional MRI data |
|
|
afni-common |
miscellaneous scripts and data files for AFNI |
|
|
afni-dbg |
debug symbols for AFNI |
|
|
afni-dev |
header and static libraries for AFNI plugin development |
| caret |
|
|
|
caret |
Computerized Anatomical Reconstruction and Editing Toolkit |
| caret-data |
|
|
|
caret-data |
common data files for Caret |
| cctools |
|
|
|
coop-computing-tools |
cooperative computing tools |
|
|
coop-computing-tools-dev |
libraries and header files for coop-computing-tools |
|
|
coop-computing-tools-doc |
documentation for coop-computing-tools |
|
|
python-workqueue |
cooperative computing tools work queue Python bindings |
| condor |
|
|
|
htcondor |
distributed workload management system |
|
|
htcondor-dbg |
distributed workload management system - debugging symbols |
|
|
htcondor-dev |
distributed workload management system - development files |
|
|
htcondor-doc |
distributed workload management system - documentation |
|
|
libclassad-dev |
HTCondor classads expression language - development library |
|
|
libclassad7 |
HTCondor classads expression language - runtime library |
| debruijn |
|
|
|
debruijn |
De Bruijn cycle generator |
| dicomnifti |
|
|
|
dicomnifti |
converts DICOM files into the NIfTI format |
| eeglab11 |
|
|
|
eeglab11-sampledata |
sample EEG data for EEGLAB tutorials |
|
|
matlab-eeglab11 |
electrophysiological data analysis |
| fsl |
|
|
|
fsl-5.0-core |
analysis tools for FMRI, MRI and DTI brain imaging |
|
|
fsl-core |
metapackage for the latest version of FSL |
| fsl-feeds |
|
|
|
fsl-feeds |
FSL Evaluation and Example Data Suite |
| fsldata |
|
|
|
fsl-5.0-doc-wiki |
FSL documentation wiki |
|
|
fsl-atlases |
FSL's MNI152 standard space stereotaxic brain atlases |
|
|
fsl-bangor-cerebellar-atlas |
probabilistic atlas of the human cerebellum |
|
|
fsl-first-data |
model data for FIRST subcortical brain segmentation |
|
|
fsl-harvard-oxford-atlases |
probabilistic atlas of human cortical brain areas (lateralized) |
|
|
fsl-harvard-oxford-cortical-lateralized-atlas |
probabilistic atlas of human cortical and subcortical brain areas |
|
|
fsl-jhu-dti-whitematter-atlas |
human brain white-matter atlas |
|
|
fsl-juelich-histological-atlas |
brain atlas based on cyto- and myelo-architectonic segmentations |
|
|
fsl-mni-structural-atlas |
hand-segmented single-subject human brain atlas |
|
|
fsl-mni152-templates |
MNI152 stereotaxic brain templates for FSL |
|
|
fsl-oxford-striatal-atlas |
probabilistic atlas of the human brain's sub-striatal regions |
|
|
fsl-oxford-thalamic-connectivity-atlas |
probabilistic brain atlas of thalamic white-matter connectivity |
|
|
fsl-possum-data |
sequence templates for the POSSUM MRI-simulator |
|
|
fsl-resting-connectivity-parcellation-atlases |
brain parcellations based on resting state connectivity |
|
|
fsl-subthalamic-nucleus-atlas |
probabilistic subthalamic nucleus atlas |
|
|
fsl-talairach-daemon-atlas |
structural anatomy labels of the Talairach atlas |
| fslmeta |
|
|
|
fsl-5.0-complete |
metapackage for the entire FSL suite (tools and data) |
|
|
fsl-complete |
metapackage for the entire FSL suite (tools and data) |
| fslview |
|
|
|
fslview |
viewer for (f)MRI and DTI data |
|
|
fslview-doc |
Documentation for FSLView |
| incf-nidash-oneclick |
|
|
|
incf-nidash-oneclick-clients |
utility for pushing DICOM data to the INCF datasharing server |
| isis |
|
|
|
isis-utils |
utilities for the ISIS neuroimaging data I/O framework |
|
|
libisis-core-dev |
I/O framework for neuroimaging data |
|
|
libisis-core0 |
I/O framework for neuroimaging data |
|
|
libisis-ioplugins-common |
data format plugins for the ISIS framework |
|
|
libisis-ioplugins-dicom |
dicom io plugin for the ISIS framework |
|
|
libisis-qt4-0 |
Qt4 bindings for ISIS data I/O framework |
|
|
libisis-qt4-dev |
Qt4 bindings for ISIS data I/O framework (development headers) |
|
|
python-isis |
Python bindings for ISIS data I/O framework (development headers) |
| itksnap |
|
|
|
itksnap |
semi-automatic segmentation of structures in 3D images |
| lazyarray |
|
|
|
python-lazyarray |
Python module providing a NumPy-compatible lazily-evaluated array |
| matlab-support |
|
|
|
matlab-support |
distro integration for local MATLAB installations |
|
|
matlab-support-dev |
helpers for packages building MATLAB toolboxes |
| mclaren-rhesus-macaque-atlas |
|
|
|
mclaren-rhesus-macaque-atlas |
MRI-based brain atlas of the rhesus macaque monkey |
| mricron |
|
|
|
mricron |
magnetic resonance image conversion, viewing and analysis |
|
|
mricron-data |
data files for MRIcron |
|
|
mricron-doc |
data files for MRIcron |
| mrtrix |
|
|
|
mrtrix |
diffusion-weighted MRI white matter tractography |
|
|
mrtrix-doc |
documentation for mrtrix |
| neo |
|
|
|
python-neo |
Python IO library for electrophysiological data formats |
| neurodebian |
|
|
|
neurodebian |
neuroscience-oriented distribution - repository configuration |
|
|
neurodebian-archive-keyring |
neuroscience-oriented distribution - GnuPG archive keys |
|
|
neurodebian-desktop |
neuroscience-oriented distribution - desktop integration |
|
|
neurodebian-dev |
neuroscience-oriented distribution - development tools |
|
|
neurodebian-popularity-contest |
neuroscience-oriented distribution - popcon integration |
| neurosynth-data |
|
|
|
fsl-neurosynth-atlas |
neurosynth - atlas for use with FSL, all 525 terms |
|
|
fsl-neurosynth-top100-atlas |
neurosynth - atlas for use with FSL, top 100 terms |
|
|
neurosynth-dataset |
neurosynth - dataset of extracted terms and activations |
| nifticlib |
|
|
|
libnifti-dev |
IO libraries for the NIfTI-1 data format |
|
|
libnifti-doc |
NIfTI library API documentation |
|
|
libnifti2 |
IO libraries for the NIfTI-1 data format |
|
|
nifti-bin |
tools shipped with the NIfTI library |
| nilearn |
|
|
|
python-nilearn |
fast and easy statistical learning on neuroimaging data |
| odin |
|
|
|
libodin-dev |
static libraries and header for ODIN sequences |
|
|
mitools |
view, convert and perform basic maths with medical image datasets |
|
|
odin |
develop, simulate and run magnetic resonance sequences |
| pprocess |
|
|
|
python-pprocess |
elementary parallel programming for Python |
| psignifit3 |
|
|
|
python-pypsignifit |
psychometric analysis of psychophysics data in Python |
| pymvpa2 |
|
|
|
python-mvpa2 |
multivariate pattern analysis with Python v. 2 |
|
|
python-mvpa2-doc |
documentation and examples for PyMVPA v. 2 |
|
|
python-mvpa2-lib |
low-level implementations and bindings for PyMVPA v. 2 |
| pymvpa2-tutorialdata |
|
|
|
python-mvpa2-tutorialdata |
data files for the PyMVPA tutorial |
| pynifti |
|
|
|
python-nifti |
Python interface to the NIfTI I/O libraries |
| pynn |
|
|
|
python-pynn |
simulator-independent specification of neuronal network models |
| pysurfer |
|
|
|
python-surfer |
visualize Freesurfer's data in Python |
| python-neuroshare |
|
|
|
python-neuroshare |
Python interface and tools for Neuroshare |
|
|
python-neuroshare-doc |
Python interface and tools for Neuroshare |
| python-quantities |
|
|
|
python-quantities |
Library for computation of physical quantities with units, based on numpy |
| rorden-mri-tutorial |
|
|
|
rorden-mri-tutorial |
Chris Rorden's MRI analysis tutorial |
|
|
rorden-mri-tutorial-data |
data files for Chris Rorden's MRI analysis tutorial |
| spm8 |
|
|
|
matlab-spm8 |
analysis of brain imaging data sequences for Matlab |
|
|
spm8-common |
analysis of brain imaging data sequences |
|
|
spm8-data |
data files for SPM8 |
|
|
spm8-doc |
manual for SPM8 |
| sri24-atlas |
|
|
|
sri24-atlas |
MRI-based brain atlas of normal adult human brain anatomy |
| stabilitycalc |
|
|
|
stabilitycalc |
evaluate fMRI scanner stability |
| testkraut |
|
|
|
testkraut |
test and evaluate heterogeneous data processing pipelines |
| via |
|
|
|
libvia-dev |
library for volumetric image analysis |
|
|
libvia-doc |
VIA library API documentation |
|
|
libvia2 |
library for volumetric image analysis |
|
|
via-bin |
tools for volumetric image analysis |
| vmri-nonfree |
|
|
|
virtual-mri-nonfree |
Virtual Magnetic Resonance Imager |
| voxbo |
|
|
|
voxbo |
processing, statistical analysis, and display of brain imaging data |
