Packages for Ubuntu 14.04 “Trusty Tahr” (trusty)

Source Binary Description
afni
afni toolkit for analyzing and visualizing functional MRI data
afni-common miscellaneous scripts and data files for AFNI
afni-dbg debug symbols for AFNI
afni-dev header and static libraries for AFNI plugin development
aghermann
aghermann Sleep-research experiment manager
ants
ants advanced normalization tools for brain and image analysis
bats
bats bash automated testing system
biosig4c++
biosig-tools format conversion tools for biomedical data formats
libbiosig-dev I/O library for biomedical data - development files
libbiosig1 I/O library for biomedical data - dynamic library
libbiosig1-dbg I/O library for biomedical data - debug symbols
octave-biosig Octave bindings for BioSig library
python-biosig Python bindings for BioSig library
brian
python-brian simulator for spiking neural networks
python-brian-doc simulator for spiking neural networks - documentation
python-brian-lib simulator for spiking neural networks -- extensions
btrbk
btrbk backup tool for btrfs volumes
btrfs-tools
btrfs-tools Checksumming Copy on Write Filesystem utilities
btrfs-tools-dbg Checksumming Copy on Write Filesystem utilities (debug)
btrfs-tools-udeb
cde
cde package everything required to execute a Linux command on another computer
citeproc-py
python-citeproc Citation Style Language (CSL) processor for Python
python3-citeproc Citation Style Language (CSL) processor for Python3
cmtk
cmtk Computational Morphometry Toolkit
cnrun
cnrun-tools NeuroML-capable neuronal network simulator (tools)
libcnrun2 NeuroML-capable neuronal network simulator (shared lib)
libcnrun2-dev NeuroML-capable neuronal network simulator (development files)
lua-cnrun NeuroML-capable neuronal network simulator (Lua package)
condor
htcondor distributed workload management system
htcondor-dbg distributed workload management system - debugging symbols
htcondor-dev distributed workload management system - development files
htcondor-doc distributed workload management system - documentation
libclassad-dev HTCondor classads expression language - development library
libclassad7 HTCondor classads expression language - runtime library
connectome-workbench
connectome-workbench brain visualization, analysis and discovery tool
connectome-workbench-dbg brain visualization, analysis and discovery tool -- debug symbols
debruijn
debruijn De Bruijn cycle generator
dicomnifti
dicomnifti converts DICOM files into the NIfTI format
dipy
python-dipy toolbox for analysis of MR diffusion imaging data
python-dipy-doc toolbox for analysis of MR diffusion imaging data -- documentation
python-dipy-lib toolbox for analysis of MR diffusion imaging data -- extensions
dmtcp
dmtcp Checkpoint/Restart functionality for Linux processes
dmtcp-dbg Debug package for dmtcp
eeglab11
eeglab11-sampledata sample EEG data for EEGLAB tutorials
matlab-eeglab11 electrophysiological data analysis
fail2ban
fail2ban ban hosts that cause multiple authentication errors
freeipmi
freeipmi GNU implementation of the IPMI protocol
freeipmi-bmc-watchdog GNU implementation of the IPMI protocol - BMC watchdog
freeipmi-common GNU implementation of the IPMI protocol - common files
freeipmi-ipmidetect GNU IPMI - IPMI node detection tool
freeipmi-ipmiseld GNU IPMI - IPMI node detection tool
freeipmi-tools GNU implementation of the IPMI protocol - tools
libfreeipmi-dev GNU IPMI - development package
libfreeipmi16 GNU IPMI - libraries
libipmiconsole-dev GNU IPMI - ipmiconsole development package
libipmiconsole2 GNU IPMI - Serial-over-Lan library
libipmidetect-dev GNU IPMI - ipmidetect development package
libipmidetect0 GNU IPMI - IPMI node detection library
libipmimonitoring-dev GNU IPMI - ipmimonitoring development package
libipmimonitoring5a GNU IPMI - Sensor monitoring library
fsl
fsl-5.0-core analysis tools for FMRI, MRI and DTI brain imaging
fsl-core metapackage for the latest version of FSL
fslmeta
fsl-5.0-complete metapackage for the entire FSL suite (tools and data)
fsl-complete metapackage for the entire FSL suite (tools and data)
fslview
fslview viewer for (f)MRI and DTI data
fslview-doc Documentation for FSLView
gcalcli
gcalcli Google Calendar Command Line Interface
gccxml
gccxml XML output extension to GCC
libgccxml-dev Libraries for building extension to gccxml output
git-annex
git-annex-standalone manage files with git, without checking their contents into git -- standalone build
glew
glew-utils OpenGL Extension Wrangler - utilities
libglew1.9 OpenGL Extension Wrangler - runtime environment
libglew1.9-dbg OpenGL Extension Wrangler (debugging symbols)
libglew1.9-dev OpenGL Extension Wrangler - development environment
libglewmx1.9 OpenGL Extension Wrangler (Multiple Rendering Contexts)
libglewmx1.9-dbg OpenGL Extension Wrangler MX (debugging symbols)
libglewmx1.9-dev OpenGL Extension Wrangler MX - development environment
gmsl
gmsl extra functions to extend functionality of GNU Makefiles
impressive
impressive PDF presentation tool with eye candies
incf-nidash-oneclick
incf-nidash-oneclick-clients utility for pushing DICOM data to the INCF datasharing server
init-system-helpers
dh-systemd debhelper add-on to handle systemd unit files
init-system-helpers helper tools for all init systems
insighttoolkit4
insighttoolkit4-examples Image processing toolkit for registration and segmentation - examples
insighttoolkit4-python Image processing toolkit for registration and segmentation - Python bindings
libinsighttoolkit4-dbg Debugging information for the Insight Toolkit
libinsighttoolkit4-dev Image processing toolkit for registration and segmentation - development
libinsighttoolkit4.7 Image processing toolkit for registration and segmentation - runtime
jdcal
python-jdcal Julian dates from proleptic Gregorian and Julian calendars
python3-jdcal Julian dates from proleptic Gregorian and Julian calendars
joblib
python-joblib tools to provide lightweight pipelining in Python
python3-joblib tools to provide lightweight pipelining in Python
lda
python-lda Topic modeling with latent Dirichlet allocation for Python 3
python3-lda Topic modeling with latent Dirichlet allocation
libfreenect
freenect library for accessing Kinect device -- metapackage
libfreenect-bin library for accessing Kinect device -- utilities and samples
libfreenect-demos library for accessing Kinect device -- dummy package
libfreenect-dev library for accessing Kinect device -- development files
libfreenect-doc library for accessing Kinect device -- documentation
libfreenect0.5 library for accessing Kinect device
python-freenect library for accessing Kinect device -- Python bindings
matlab-support
matlab-support distro integration for local MATLAB installations
matlab-support-dev helpers for packages building MATLAB toolboxes
melview
fsl-melview viewer for the output of FSL's MELODIC
mia
libmia-2.0-8 library for 2D and 3D gray scale image processing
libmia-2.0-8-dbg Debug information for the MIA library
libmia-2.0-dev library for 2D and 3D gray scale image processing, development files
libmia-2.0-doc library for 2D and 3D gray scale image processing, documentation
mia-tools Command line tools for gray scale image processing
mia-tools-dbg Debugging information for the MIA command line tools
mia-tools-doc Cross-referenced documentation of the MIA command line tools
mpi4py
python-mpi4py bindings of the Message Passing Interface (MPI) standard
python-mpi4py-dbg bindings of the MPI standard -- debug symbols
python-mpi4py-doc bindings of the MPI standard -- documentation
python3-mpi4py bindings of the Message Passing Interface (MPI) standard
python3-mpi4py-dbg bindings of the MPI standard -- debug symbols
mriconvert
mriconvert medical image file conversion utility
mricron
mricron magnetic resonance image conversion, viewing and analysis
mricron-data data files for MRIcron
mricron-doc data files for MRIcron
mrtrix
mrtrix diffusion-weighted MRI white matter tractography
mrtrix-doc documentation for mrtrix
msgpack-python
python-msgpack Python implementation of MessagePack format
python3-msgpack Python 3 implementation of MessagePack format
netselect
netselect speed tester for choosing a fast network server
netselect-apt speed tester for choosing a fast Debian mirror
neurodebian
neurodebian neuroscience-oriented distribution - repository configuration
neurodebian-archive-keyring neuroscience-oriented distribution - GnuPG archive keys
neurodebian-desktop neuroscience-oriented distribution - desktop integration
neurodebian-dev neuroscience-oriented distribution - development tools
neurodebian-popularity-contest neuroscience-oriented distribution - popcon integration
neurosynth
python-neurosynth large-scale synthesis of functional neuroimaging data
nibabel
python-nibabel Python bindings to various neuroimaging data formats
python-nibabel-doc documentation for NiBabel
python3-nibabel Python3 bindings to various neuroimaging data formats
nifti2dicom
nifti2dicom convert 3D medical images to DICOM 2D series
nifti2dicom-data data files for nifti2dicom
qnifti2dicom convert 3D medical images to DICOM 2D series (gui)
nifticlib
libnifti-dev IO libraries for the NIfTI-1 data format
libnifti-doc NIfTI library API documentation
libnifti2 IO libraries for the NIfTI-1 data format
nifti-bin tools shipped with the NIfTI library
nilearn
python-nilearn fast and easy statistical learning on neuroimaging data
nipy
python-nipy Analysis of structural and functional neuroimaging data
python-nipy-doc documentation and examples for NiPy
python-nipy-lib Analysis of structural and functional neuroimaging data
python-nipy-lib-dbg Analysis of structural and functional neuroimaging data
nipype
python-nipype Neuroimaging data analysis pipelines in Python
python-nipype-doc Neuroimaging data analysis pipelines in Python -- documentation
nitime
python-nitime timeseries analysis for neuroscience data (nitime)
python-nitime-doc timeseries analysis for neuroscience data (nitime) -- documentation
nuitka
nuitka Python compiler with full language support and CPython compatibility
numexpr
python-numexpr Fast numerical array expression evaluator for Python and NumPy
python-numexpr-dbg Fast numerical array expression evaluator for Python and NumPy (debug ext)
python3-numexpr Fast numerical array expression evaluator for Python 3 and NumPy
python3-numexpr-dbg Fast numerical array expression evaluator for Python 3 and NumPy (debug ext)
openpyxl
python-openpyxl module to read/write OpenXML xlsx/xlsm files
python3-openpyxl module to read/write OpenXML xlsx/xlsm files
openwalnut
libopenwalnut1 Framework for multi-modal medical and brain data visualization
libopenwalnut1-dev Development files for the OpenWalnut visualization framework
libopenwalnut1-doc Developer documentation for the OpenWalnut visualization framework
openwalnut-modules Loaders, algorithms and visualization modules for OpenWalnut
openwalnut-qt4 Qt based user interface for OpenWalnut
pandas
python-pandas data structures for "relational" or "labeled" data
python-pandas-doc documentation and examples for pandas
python-pandas-lib low-level implementations and bindings for pandas
python3-pandas data structures for "relational" or "labeled" data - Python 3
python3-pandas-lib low-level implementations and bindings for pandas - Python 3
patool
patool command line archive file manager
patsy
python-patsy statistical models in Python using symbolic formulas
python-patsy-doc documentation and examples for patsy
python3-patsy statistical models in Python using symbolic formulas
pprocess
python-pprocess elementary parallel programming for Python
psignifit3
python-pypsignifit psychometric analysis of psychophysics data in Python
psychopy
psychopy environment for creating psychology stimuli in Python
psychtoolbox-3
octave-psychtoolbox-3 toolbox for vision research -- Octave bindings
psychtoolbox-3-common toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-dbg toolbox for vision research -- debug symbols for binaries
psychtoolbox-3-lib toolbox for vision research -- arch-specific parts
psychtoolbox-3-nonfree
matlab-psychtoolbox-3 toolbox for vision research -- Matlab bindings
matlab-psychtoolbox-3-nonfree toolbox for vision research -- Matlab binary blobs
octave-psychtoolbox-3-nonfree toolbox for vision research -- Octave binary blobs
pycharm-community-sloppy
pycharm-community-sloppy PyCharm IDE (sloppy packaging)
pydicom
python-dicom DICOM medical file reading and writing
pyepl
python-pyepl module for coding psychology experiments in Python
python-pyepl-common module for coding psychology experiments in Python
pymc
python-pymc Bayesian statistical models and fitting algorithms
python-pymc-doc Bayesian statistical models and fitting algorithms
pymvpa2
python-mvpa2 multivariate pattern analysis with Python v. 2
python-mvpa2-doc documentation and examples for PyMVPA v. 2
python-mvpa2-lib low-level implementations and bindings for PyMVPA v. 2
pynn
python-pynn simulator-independent specification of neuronal network models
pysurfer
python-surfer visualize Freesurfer's data in Python
pytest
python-pytest Simple, powerful testing in Python
python-pytest-doc Simple, powerful testing in Python - Documentation
python3-pytest Simple, powerful testing in Python3
pytest-localserver
python-pytest-localserver py.test plugin to test server connections locally (Python 2)
python3-pytest-localserver py.test plugin to test server connections locally (Python 3)
pytest-tornado
python-pytest-tornado py.test plugin to test Tornado applications
python3-pytest-tornado py.test plugin to test Tornado applications (Python 3)
python-expyriment
python-expyriment Python library for cognitive and neuroscientific experiments
python-git
python-git Python library to interact with Git repositories
python-gitdb
python-gitdb pure-Python git object database
python-mne
python-mne Python modules for MEG and EEG data analysis
python-psutil
python-psutil module providing convenience functions for managing processes
python3-psutil module providing convenience functions for managing processes (Python3)
python-py
python-py Advanced Python development support library (Python 2)
python3-py Advanced Python development support library (Python 3)
python-scrapy
python-scrapy Python web scraping and crawling framework
python-scrapy-doc Python web scraping and crawling framework documentation
python-smmap
python-smmap pure Python implementation of a sliding window memory map manager
python-w3lib
python-w3lib Collection of web-related functions for Python (Python 2)
python3-w3lib Collection of web-related functions for Python (Python 3)
python-werkzeug
python-werkzeug collection of utilities for WSGI applications
python-werkzeug-doc documentation for the werkzeug Python library
python3-werkzeug collection of utilities for WSGI applications
scikit-learn
python-scikits-learn transitional compatibility package for scikits.learn -> sklearn migration
python-sklearn Python modules for machine learning and data mining
python-sklearn-doc documentation and examples for scikit-learn
python-sklearn-lib low-level implementations and bindings for scikit-learn
seaborn
python-seaborn statistical visualization library
python3-seaborn statistical visualization library
skimage
python-skimage Python modules for image processing
python-skimage-doc Documentation and examples for scikit-image
python-skimage-lib Optimized low-level algorithms for scikit-image
python3-skimage Python 3 modules for image processing
python3-skimage-lib Optimized low-level algorithms for Python 3 scikit-image
sphinx-rtd-theme
python-sphinx-rtd-theme sphinx theme from readthedocs.org (Python 2)
python3-sphinx-rtd-theme sphinx theme from readthedocs.org (Python 3)
spm8
matlab-spm8 analysis of brain imaging data sequences for Matlab
spm8-common analysis of brain imaging data sequences
spm8-data data files for SPM8
spm8-doc manual for SPM8
spykeviewer
spykeviewer graphical utility for analyzing electrophysiological data
stabilitycalc
stabilitycalc evaluate fMRI scanner stability
stimfit
python-stfio Python module to read common electrophysiology file formats.
stimfit Program for viewing and analyzing electrophysiological data
stimfit-dbg Debug symbols for stimfit
testkraut
testkraut test and evaluate heterogeneous data processing pipelines
utopia-documents
utopia-documents PDF reader that displays interactive annotations on scientific articles.
utopia-documents-dbg debugging symbols for utopia-documents
vmri-nonfree
virtual-mri-nonfree Virtual Magnetic Resonance Imager
vrpn
libvrpn-dev Virtual Reality Peripheral Network (development files)
libvrpn0 Virtual Reality Peripheral Network (client library)
libvrpnserver0 Virtual Reality Peripheral Network (server library)
vrpn Virtual Reality Peripheral Network (executables)
vrpn-dbg Virtual Reality Peripheral Network (debugging symbols)
vtk-dicom
libvtk-dicom-java DICOM for VTK - java
libvtk-dicom0.5 DICOM for VTK - lib
libvtk-dicom0.5-dev DICOM for VTK - dev
python-vtk-dicom DICOM for VTK - python
vtk-dicom-tools DICOM for VTK - tools
The source code for this portal is licensed under the GPL-3 and is available on GitHub.