| afni |
|
|
|
afni |
toolkit for analyzing and visualizing functional MRI data |
|
|
afni-common |
miscellaneous scripts and data files for AFNI |
|
|
afni-dbg |
debug symbols for AFNI |
|
|
afni-dev |
header and static libraries for AFNI plugin development |
| aghermann |
|
|
|
aghermann |
Sleep-research experiment manager |
| ants |
|
|
|
ants |
advanced normalization tools for brain and image analysis |
| bats |
|
|
|
bats |
bash automated testing system |
| biosig4c++ |
|
|
|
biosig-tools |
format conversion tools for biomedical data formats |
|
|
libbiosig-dev |
I/O library for biomedical data - development files |
|
|
libbiosig1 |
I/O library for biomedical data - dynamic library |
|
|
libbiosig1-dbg |
I/O library for biomedical data - debug symbols |
|
|
octave-biosig |
Octave bindings for BioSig library |
|
|
python-biosig |
Python bindings for BioSig library |
| brian |
|
|
|
python-brian |
simulator for spiking neural networks |
|
|
python-brian-doc |
simulator for spiking neural networks - documentation |
|
|
python-brian-lib |
simulator for spiking neural networks -- extensions |
| btrbk |
|
|
|
btrbk |
backup tool for btrfs volumes |
| btrfs-tools |
|
|
|
btrfs-tools |
Checksumming Copy on Write Filesystem utilities |
|
|
btrfs-tools-dbg |
Checksumming Copy on Write Filesystem utilities (debug) |
|
|
btrfs-tools-udeb |
|
| cde |
|
|
|
cde |
package everything required to execute a Linux command on another computer |
| citeproc-py |
|
|
|
python-citeproc |
Citation Style Language (CSL) processor for Python |
|
|
python3-citeproc |
Citation Style Language (CSL) processor for Python3 |
| cmtk |
|
|
|
cmtk |
Computational Morphometry Toolkit |
| cnrun |
|
|
|
cnrun-tools |
NeuroML-capable neuronal network simulator (tools) |
|
|
libcnrun2 |
NeuroML-capable neuronal network simulator (shared lib) |
|
|
libcnrun2-dev |
NeuroML-capable neuronal network simulator (development files) |
|
|
lua-cnrun |
NeuroML-capable neuronal network simulator (Lua package) |
| condor |
|
|
|
htcondor |
distributed workload management system |
|
|
htcondor-dbg |
distributed workload management system - debugging symbols |
|
|
htcondor-dev |
distributed workload management system - development files |
|
|
htcondor-doc |
distributed workload management system - documentation |
|
|
libclassad-dev |
HTCondor classads expression language - development library |
|
|
libclassad7 |
HTCondor classads expression language - runtime library |
| connectome-workbench |
|
|
|
connectome-workbench |
brain visualization, analysis and discovery tool |
|
|
connectome-workbench-dbg |
brain visualization, analysis and discovery tool -- debug symbols |
| debruijn |
|
|
|
debruijn |
De Bruijn cycle generator |
| dicomnifti |
|
|
|
dicomnifti |
converts DICOM files into the NIfTI format |
| dipy |
|
|
|
python-dipy |
toolbox for analysis of MR diffusion imaging data |
|
|
python-dipy-doc |
toolbox for analysis of MR diffusion imaging data -- documentation |
|
|
python-dipy-lib |
toolbox for analysis of MR diffusion imaging data -- extensions |
| dmtcp |
|
|
|
dmtcp |
Checkpoint/Restart functionality for Linux processes |
|
|
dmtcp-dbg |
Debug package for dmtcp |
| eeglab11 |
|
|
|
eeglab11-sampledata |
sample EEG data for EEGLAB tutorials |
|
|
matlab-eeglab11 |
electrophysiological data analysis |
| fail2ban |
|
|
|
fail2ban |
ban hosts that cause multiple authentication errors |
| freeipmi |
|
|
|
freeipmi |
GNU implementation of the IPMI protocol |
|
|
freeipmi-bmc-watchdog |
GNU implementation of the IPMI protocol - BMC watchdog |
|
|
freeipmi-common |
GNU implementation of the IPMI protocol - common files |
|
|
freeipmi-ipmidetect |
GNU IPMI - IPMI node detection tool |
|
|
freeipmi-ipmiseld |
GNU IPMI - IPMI node detection tool |
|
|
freeipmi-tools |
GNU implementation of the IPMI protocol - tools |
|
|
libfreeipmi-dev |
GNU IPMI - development package |
|
|
libfreeipmi16 |
GNU IPMI - libraries |
|
|
libipmiconsole-dev |
GNU IPMI - ipmiconsole development package |
|
|
libipmiconsole2 |
GNU IPMI - Serial-over-Lan library |
|
|
libipmidetect-dev |
GNU IPMI - ipmidetect development package |
|
|
libipmidetect0 |
GNU IPMI - IPMI node detection library |
|
|
libipmimonitoring-dev |
GNU IPMI - ipmimonitoring development package |
|
|
libipmimonitoring5a |
GNU IPMI - Sensor monitoring library |
| fsl |
|
|
|
fsl-5.0-core |
analysis tools for FMRI, MRI and DTI brain imaging |
|
|
fsl-core |
metapackage for the latest version of FSL |
| fslmeta |
|
|
|
fsl-5.0-complete |
metapackage for the entire FSL suite (tools and data) |
|
|
fsl-complete |
metapackage for the entire FSL suite (tools and data) |
| fslview |
|
|
|
fslview |
viewer for (f)MRI and DTI data |
|
|
fslview-doc |
Documentation for FSLView |
| gcalcli |
|
|
|
gcalcli |
Google Calendar Command Line Interface |
| gccxml |
|
|
|
gccxml |
XML output extension to GCC |
|
|
libgccxml-dev |
Libraries for building extension to gccxml output |
| git-annex |
|
|
|
git-annex-standalone |
manage files with git, without checking their contents into git -- standalone build |
| glew |
|
|
|
glew-utils |
OpenGL Extension Wrangler - utilities |
|
|
libglew1.9 |
OpenGL Extension Wrangler - runtime environment |
|
|
libglew1.9-dbg |
OpenGL Extension Wrangler (debugging symbols) |
|
|
libglew1.9-dev |
OpenGL Extension Wrangler - development environment |
|
|
libglewmx1.9 |
OpenGL Extension Wrangler (Multiple Rendering Contexts) |
|
|
libglewmx1.9-dbg |
OpenGL Extension Wrangler MX (debugging symbols) |
|
|
libglewmx1.9-dev |
OpenGL Extension Wrangler MX - development environment |
| gmsl |
|
|
|
gmsl |
extra functions to extend functionality of GNU Makefiles |
| impressive |
|
|
|
impressive |
PDF presentation tool with eye candies |
| incf-nidash-oneclick |
|
|
|
incf-nidash-oneclick-clients |
utility for pushing DICOM data to the INCF datasharing server |
| init-system-helpers |
|
|
|
dh-systemd |
debhelper add-on to handle systemd unit files |
|
|
init-system-helpers |
helper tools for all init systems |
| insighttoolkit4 |
|
|
|
insighttoolkit4-examples |
Image processing toolkit for registration and segmentation - examples |
|
|
insighttoolkit4-python |
Image processing toolkit for registration and segmentation - Python bindings |
|
|
libinsighttoolkit4-dbg |
Debugging information for the Insight Toolkit |
|
|
libinsighttoolkit4-dev |
Image processing toolkit for registration and segmentation - development |
|
|
libinsighttoolkit4.7 |
Image processing toolkit for registration and segmentation - runtime |
| jdcal |
|
|
|
python-jdcal |
Julian dates from proleptic Gregorian and Julian calendars |
|
|
python3-jdcal |
Julian dates from proleptic Gregorian and Julian calendars |
| joblib |
|
|
|
python-joblib |
tools to provide lightweight pipelining in Python |
|
|
python3-joblib |
tools to provide lightweight pipelining in Python |
| lda |
|
|
|
python-lda |
Topic modeling with latent Dirichlet allocation for Python 3 |
|
|
python3-lda |
Topic modeling with latent Dirichlet allocation |
| libfreenect |
|
|
|
freenect |
library for accessing Kinect device -- metapackage |
|
|
libfreenect-bin |
library for accessing Kinect device -- utilities and samples |
|
|
libfreenect-demos |
library for accessing Kinect device -- dummy package |
|
|
libfreenect-dev |
library for accessing Kinect device -- development files |
|
|
libfreenect-doc |
library for accessing Kinect device -- documentation |
|
|
libfreenect0.5 |
library for accessing Kinect device |
|
|
python-freenect |
library for accessing Kinect device -- Python bindings |
| matlab-support |
|
|
|
matlab-support |
distro integration for local MATLAB installations |
|
|
matlab-support-dev |
helpers for packages building MATLAB toolboxes |
| melview |
|
|
|
fsl-melview |
viewer for the output of FSL's MELODIC |
| mia |
|
|
|
libmia-2.0-8 |
library for 2D and 3D gray scale image processing |
|
|
libmia-2.0-8-dbg |
Debug information for the MIA library |
|
|
libmia-2.0-dev |
library for 2D and 3D gray scale image processing, development files |
|
|
libmia-2.0-doc |
library for 2D and 3D gray scale image processing, documentation |
|
|
mia-tools |
Command line tools for gray scale image processing |
|
|
mia-tools-dbg |
Debugging information for the MIA command line tools |
|
|
mia-tools-doc |
Cross-referenced documentation of the MIA command line tools |
| mpi4py |
|
|
|
python-mpi4py |
bindings of the Message Passing Interface (MPI) standard |
|
|
python-mpi4py-dbg |
bindings of the MPI standard -- debug symbols |
|
|
python-mpi4py-doc |
bindings of the MPI standard -- documentation |
|
|
python3-mpi4py |
bindings of the Message Passing Interface (MPI) standard |
|
|
python3-mpi4py-dbg |
bindings of the MPI standard -- debug symbols |
| mriconvert |
|
|
|
mriconvert |
medical image file conversion utility |
| mricron |
|
|
|
mricron |
magnetic resonance image conversion, viewing and analysis |
|
|
mricron-data |
data files for MRIcron |
|
|
mricron-doc |
data files for MRIcron |
| mrtrix |
|
|
|
mrtrix |
diffusion-weighted MRI white matter tractography |
|
|
mrtrix-doc |
documentation for mrtrix |
| msgpack-python |
|
|
|
python-msgpack |
Python implementation of MessagePack format |
|
|
python3-msgpack |
Python 3 implementation of MessagePack format |
| netselect |
|
|
|
netselect |
speed tester for choosing a fast network server |
|
|
netselect-apt |
speed tester for choosing a fast Debian mirror |
| neurodebian |
|
|
|
neurodebian |
neuroscience-oriented distribution - repository configuration |
|
|
neurodebian-archive-keyring |
neuroscience-oriented distribution - GnuPG archive keys |
|
|
neurodebian-desktop |
neuroscience-oriented distribution - desktop integration |
|
|
neurodebian-dev |
neuroscience-oriented distribution - development tools |
|
|
neurodebian-popularity-contest |
neuroscience-oriented distribution - popcon integration |
| neurosynth |
|
|
|
python-neurosynth |
large-scale synthesis of functional neuroimaging data |
| nibabel |
|
|
|
python-nibabel |
Python bindings to various neuroimaging data formats |
|
|
python-nibabel-doc |
documentation for NiBabel |
|
|
python3-nibabel |
Python3 bindings to various neuroimaging data formats |
| nifti2dicom |
|
|
|
nifti2dicom |
convert 3D medical images to DICOM 2D series |
|
|
nifti2dicom-data |
data files for nifti2dicom |
|
|
qnifti2dicom |
convert 3D medical images to DICOM 2D series (gui) |
| nifticlib |
|
|
|
libnifti-dev |
IO libraries for the NIfTI-1 data format |
|
|
libnifti-doc |
NIfTI library API documentation |
|
|
libnifti2 |
IO libraries for the NIfTI-1 data format |
|
|
nifti-bin |
tools shipped with the NIfTI library |
| nilearn |
|
|
|
python-nilearn |
fast and easy statistical learning on neuroimaging data |
| nipy |
|
|
|
python-nipy |
Analysis of structural and functional neuroimaging data |
|
|
python-nipy-doc |
documentation and examples for NiPy |
|
|
python-nipy-lib |
Analysis of structural and functional neuroimaging data |
|
|
python-nipy-lib-dbg |
Analysis of structural and functional neuroimaging data |
| nipype |
|
|
|
python-nipype |
Neuroimaging data analysis pipelines in Python |
|
|
python-nipype-doc |
Neuroimaging data analysis pipelines in Python -- documentation |
| nitime |
|
|
|
python-nitime |
timeseries analysis for neuroscience data (nitime) |
|
|
python-nitime-doc |
timeseries analysis for neuroscience data (nitime) -- documentation |
| nuitka |
|
|
|
nuitka |
Python compiler with full language support and CPython compatibility |
| numexpr |
|
|
|
python-numexpr |
Fast numerical array expression evaluator for Python and NumPy |
|
|
python-numexpr-dbg |
Fast numerical array expression evaluator for Python and NumPy (debug ext) |
|
|
python3-numexpr |
Fast numerical array expression evaluator for Python 3 and NumPy |
|
|
python3-numexpr-dbg |
Fast numerical array expression evaluator for Python 3 and NumPy (debug ext) |
| openpyxl |
|
|
|
python-openpyxl |
module to read/write OpenXML xlsx/xlsm files |
|
|
python3-openpyxl |
module to read/write OpenXML xlsx/xlsm files |
| openwalnut |
|
|
|
libopenwalnut1 |
Framework for multi-modal medical and brain data visualization |
|
|
libopenwalnut1-dev |
Development files for the OpenWalnut visualization framework |
|
|
libopenwalnut1-doc |
Developer documentation for the OpenWalnut visualization framework |
|
|
openwalnut-modules |
Loaders, algorithms and visualization modules for OpenWalnut |
|
|
openwalnut-qt4 |
Qt based user interface for OpenWalnut |
| pandas |
|
|
|
python-pandas |
data structures for "relational" or "labeled" data |
|
|
python-pandas-doc |
documentation and examples for pandas |
|
|
python-pandas-lib |
low-level implementations and bindings for pandas |
|
|
python3-pandas |
data structures for "relational" or "labeled" data - Python 3 |
|
|
python3-pandas-lib |
low-level implementations and bindings for pandas - Python 3 |
| patool |
|
|
|
patool |
command line archive file manager |
| patsy |
|
|
|
python-patsy |
statistical models in Python using symbolic formulas |
|
|
python-patsy-doc |
documentation and examples for patsy |
|
|
python3-patsy |
statistical models in Python using symbolic formulas |
| pprocess |
|
|
|
python-pprocess |
elementary parallel programming for Python |
| psignifit3 |
|
|
|
python-pypsignifit |
psychometric analysis of psychophysics data in Python |
| psychopy |
|
|
|
psychopy |
environment for creating psychology stimuli in Python |
| psychtoolbox-3 |
|
|
|
octave-psychtoolbox-3 |
toolbox for vision research -- Octave bindings |
|
|
psychtoolbox-3-common |
toolbox for vision research -- arch/interpreter independent part |
|
|
psychtoolbox-3-dbg |
toolbox for vision research -- debug symbols for binaries |
|
|
psychtoolbox-3-lib |
toolbox for vision research -- arch-specific parts |
| psychtoolbox-3-nonfree |
|
|
|
matlab-psychtoolbox-3 |
toolbox for vision research -- Matlab bindings |
|
|
matlab-psychtoolbox-3-nonfree |
toolbox for vision research -- Matlab binary blobs |
|
|
octave-psychtoolbox-3-nonfree |
toolbox for vision research -- Octave binary blobs |
| pycharm-community-sloppy |
|
|
|
pycharm-community-sloppy |
PyCharm IDE (sloppy packaging) |
| pydicom |
|
|
|
python-dicom |
DICOM medical file reading and writing |
| pyepl |
|
|
|
python-pyepl |
module for coding psychology experiments in Python |
|
|
python-pyepl-common |
module for coding psychology experiments in Python |
| pymc |
|
|
|
python-pymc |
Bayesian statistical models and fitting algorithms |
|
|
python-pymc-doc |
Bayesian statistical models and fitting algorithms |
| pymvpa2 |
|
|
|
python-mvpa2 |
multivariate pattern analysis with Python v. 2 |
|
|
python-mvpa2-doc |
documentation and examples for PyMVPA v. 2 |
|
|
python-mvpa2-lib |
low-level implementations and bindings for PyMVPA v. 2 |
| pynn |
|
|
|
python-pynn |
simulator-independent specification of neuronal network models |
| pysurfer |
|
|
|
python-surfer |
visualize Freesurfer's data in Python |
| pytest |
|
|
|
python-pytest |
Simple, powerful testing in Python |
|
|
python-pytest-doc |
Simple, powerful testing in Python - Documentation |
|
|
python3-pytest |
Simple, powerful testing in Python3 |
| pytest-localserver |
|
|
|
python-pytest-localserver |
py.test plugin to test server connections locally (Python 2) |
|
|
python3-pytest-localserver |
py.test plugin to test server connections locally (Python 3) |
| pytest-tornado |
|
|
|
python-pytest-tornado |
py.test plugin to test Tornado applications |
|
|
python3-pytest-tornado |
py.test plugin to test Tornado applications (Python 3) |
| python-expyriment |
|
|
|
python-expyriment |
Python library for cognitive and neuroscientific experiments |
| python-git |
|
|
|
python-git |
Python library to interact with Git repositories |
| python-gitdb |
|
|
|
python-gitdb |
pure-Python git object database |
| python-mne |
|
|
|
python-mne |
Python modules for MEG and EEG data analysis |
| python-psutil |
|
|
|
python-psutil |
module providing convenience functions for managing processes |
|
|
python3-psutil |
module providing convenience functions for managing processes (Python3) |
| python-py |
|
|
|
python-py |
Advanced Python development support library (Python 2) |
|
|
python3-py |
Advanced Python development support library (Python 3) |
| python-scrapy |
|
|
|
python-scrapy |
Python web scraping and crawling framework |
|
|
python-scrapy-doc |
Python web scraping and crawling framework documentation |
| python-smmap |
|
|
|
python-smmap |
pure Python implementation of a sliding window memory map manager |
| python-w3lib |
|
|
|
python-w3lib |
Collection of web-related functions for Python (Python 2) |
|
|
python3-w3lib |
Collection of web-related functions for Python (Python 3) |
| python-werkzeug |
|
|
|
python-werkzeug |
collection of utilities for WSGI applications |
|
|
python-werkzeug-doc |
documentation for the werkzeug Python library |
|
|
python3-werkzeug |
collection of utilities for WSGI applications |
| scikit-learn |
|
|
|
python-scikits-learn |
transitional compatibility package for scikits.learn -> sklearn migration |
|
|
python-sklearn |
Python modules for machine learning and data mining |
|
|
python-sklearn-doc |
documentation and examples for scikit-learn |
|
|
python-sklearn-lib |
low-level implementations and bindings for scikit-learn |
| seaborn |
|
|
|
python-seaborn |
statistical visualization library |
|
|
python3-seaborn |
statistical visualization library |
| skimage |
|
|
|
python-skimage |
Python modules for image processing |
|
|
python-skimage-doc |
Documentation and examples for scikit-image |
|
|
python-skimage-lib |
Optimized low-level algorithms for scikit-image |
|
|
python3-skimage |
Python 3 modules for image processing |
|
|
python3-skimage-lib |
Optimized low-level algorithms for Python 3 scikit-image |
| sphinx-rtd-theme |
|
|
|
python-sphinx-rtd-theme |
sphinx theme from readthedocs.org (Python 2) |
|
|
python3-sphinx-rtd-theme |
sphinx theme from readthedocs.org (Python 3) |
| spm8 |
|
|
|
matlab-spm8 |
analysis of brain imaging data sequences for Matlab |
|
|
spm8-common |
analysis of brain imaging data sequences |
|
|
spm8-data |
data files for SPM8 |
|
|
spm8-doc |
manual for SPM8 |
| spykeviewer |
|
|
|
spykeviewer |
graphical utility for analyzing electrophysiological data |
| stabilitycalc |
|
|
|
stabilitycalc |
evaluate fMRI scanner stability |
| stimfit |
|
|
|
python-stfio |
Python module to read common electrophysiology file formats. |
|
|
stimfit |
Program for viewing and analyzing electrophysiological data |
|
|
stimfit-dbg |
Debug symbols for stimfit |
| testkraut |
|
|
|
testkraut |
test and evaluate heterogeneous data processing pipelines |
| utopia-documents |
|
|
|
utopia-documents |
PDF reader that displays interactive annotations on scientific articles. |
|
|
utopia-documents-dbg |
debugging symbols for utopia-documents |
| vmri-nonfree |
|
|
|
virtual-mri-nonfree |
Virtual Magnetic Resonance Imager |
| vrpn |
|
|
|
libvrpn-dev |
Virtual Reality Peripheral Network (development files) |
|
|
libvrpn0 |
Virtual Reality Peripheral Network (client library) |
|
|
libvrpnserver0 |
Virtual Reality Peripheral Network (server library) |
|
|
vrpn |
Virtual Reality Peripheral Network (executables) |
|
|
vrpn-dbg |
Virtual Reality Peripheral Network (debugging symbols) |
| vtk-dicom |
|
|
|
libvtk-dicom-java |
DICOM for VTK - java |
|
|
libvtk-dicom0.5 |
DICOM for VTK - lib |
|
|
libvtk-dicom0.5-dev |
DICOM for VTK - dev |
|
|
python-vtk-dicom |
DICOM for VTK - python |
|
|
vtk-dicom-tools |
DICOM for VTK - tools |
