Complete package list

Source Binary Description
afni
afni toolkit for analyzing and visualizing functional MRI data
afni-common miscellaneous scripts and data files for AFNI
afni-dbg debug symbols for AFNI
afni-dev header and static libraries for AFNI plugin development
afni-data
afni-atlases standard space brain atlases for AFNI
aghermann
aghermann Sleep-research experiment manager
ants
ants advanced normalization tools for brain and image analysis
arno-iptables-firewall
arno-iptables-firewall single- and multi-homed firewall script with DSL/ADSL support
autotools-dev
autotools-dev Update infrastructure for config.{guess,sub} files
bats
bats bash automated testing system
biosig4c++
biosig-tools format conversion tools for biomedical data formats
libbiosig-dev I/O library for biomedical data - development files
libbiosig1 I/O library for biomedical data - dynamic library
libbiosig1-dbg I/O library for biomedical data - debug symbols
octave-biosig Octave bindings for BioSig library
python-biosig Python bindings for BioSig library
brian
python-brian simulator for spiking neural networks
python-brian-doc simulator for spiking neural networks - documentation
python-brian-lib simulator for spiking neural networks -- extensions
btrbk
btrbk backup tool for btrfs volumes
btrfs-tools
btrfs-tools Checksumming Copy on Write Filesystem utilities
btrfs-tools-dbg Checksumming Copy on Write Filesystem utilities (debug)
btrfs-tools-udeb
caret
caret Computerized Anatomical Reconstruction and Editing Toolkit
caret-data
caret-data common data files for Caret
cctools
coop-computing-tools cooperative computing tools
coop-computing-tools-dev libraries and header files for coop-computing-tools
coop-computing-tools-doc documentation for coop-computing-tools
python-workqueue cooperative computing tools work queue Python bindings
cde
cde package everything required to execute a Linux command on another computer
cfflib
python-cfflib Multi-modal connectome and metadata management and integration
citeproc-py
python-citeproc Citation Style Language (CSL) processor for Python
python3-citeproc Citation Style Language (CSL) processor for Python3
cmtk
cmtk Computational Morphometry Toolkit
cnrun
cnrun-tools NeuroML-capable neuronal network simulator (tools)
libcnrun2 NeuroML-capable neuronal network simulator (shared lib)
libcnrun2-dev NeuroML-capable neuronal network simulator (development files)
lua-cnrun NeuroML-capable neuronal network simulator (Lua package)
condor
htcondor distributed workload management system
htcondor-dbg distributed workload management system - debugging symbols
htcondor-dev distributed workload management system - development files
htcondor-doc distributed workload management system - documentation
libclassad-dev HTCondor classads expression language - development library
libclassad7 HTCondor classads expression language - runtime library
connectome-workbench
connectome-workbench brain visualization, analysis and discovery tool
connectome-workbench-dbg brain visualization, analysis and discovery tool -- debug symbols
connectomeviewer
connectomeviewer Interactive Analysis and Visualization for MR Connectomics
cython
cython C-Extensions for Python
cython-dbg C-Extensions for Python (Debug Build of Cython)
debhelper
debhelper helper programs for debian/rules
debian-handbook
debian-handbook reference book for Debian users and system administrators
debootstrap
debootstrap Bootstrap a basic Debian system
debootstrap-udeb
debruijn
debruijn De Bruijn cycle generator
dh-autoreconf
dh-autoreconf debhelper add-on to call autoreconf and clean up after the build
dh-python
dh-python Debian helper tools for packaging Python libraries and applications
dicomnifti
dicomnifti converts DICOM files into the NIfTI format
dipy
python-dipy toolbox for analysis of MR diffusion imaging data
python-dipy-doc toolbox for analysis of MR diffusion imaging data -- documentation
python-dipy-lib toolbox for analysis of MR diffusion imaging data -- extensions
dmtcp
dmtcp Checkpoint/Restart functionality for Linux processes
dmtcp-dbg Debug package for dmtcp
double-conversion
libdouble-conversion-dbg routines to convert IEEE floats to and from strings (debugging symbols)
libdouble-conversion-dev routines to convert IEEE floats to and from strings (development files)
libdouble-conversion1 routines to convert IEEE floats to and from strings
drawtk
libdrawtk-dev Library to simple and efficient 2D drawings (development files)
libdrawtk0 Library to simple and efficient 2D drawings
libdrawtk0-dbg Library to simple and efficient 2D drawings (debugging symbols)
edac-utils
edac-utils report kernel-detected PCI and ECC RAM errors
libedac-dev report kernel-detected PCI and ECC RAM errors
libedac1 report kernel-detected PCI and ECC RAM errors
libedac1-dbg report kernel-detected PCI and ECC RAM errors
eegdev
eegdev-plugins-free Biosignal acquisition device library (free plugins)
libeegdev-dev Biosignal acquisition device library (Developement files)
libeegdev0 Biosignal acquisition device library
libeegdev0-dbg Biosignal acquisition device library (Debugging symbols)
eeglab11
eeglab11-sampledata sample EEG data for EEGLAB tutorials
matlab-eeglab11 electrophysiological data analysis
eegview
eegview Software to display EEG data in realtime
eigen3
libeigen3-dev lightweight C++ template library for linear algebra
libeigen3-doc eigen3 API docmentation
fail2ban
fail2ban ban hosts that cause multiple authentication errors
fis-gtm
fis-gtm metapackage for the latest version of FIS-GT.M database
fis-gtm-6.0-003 package for FIS-GT.M database
freeipmi
freeipmi GNU implementation of the IPMI protocol
freeipmi-bmc-watchdog GNU implementation of the IPMI protocol - BMC watchdog
freeipmi-common GNU implementation of the IPMI protocol - common files
freeipmi-ipmidetect GNU IPMI - IPMI node detection tool
freeipmi-ipmiseld GNU IPMI - IPMI node detection tool
freeipmi-tools GNU implementation of the IPMI protocol - tools
libfreeipmi-dev GNU IPMI - development package
libfreeipmi16 GNU IPMI - libraries
libipmiconsole-dev GNU IPMI - ipmiconsole development package
libipmiconsole2 GNU IPMI - Serial-over-Lan library
libipmidetect-dev GNU IPMI - ipmidetect development package
libipmidetect0 GNU IPMI - IPMI node detection library
libipmimonitoring-dev GNU IPMI - ipmimonitoring development package
libipmimonitoring5a GNU IPMI - Sensor monitoring library
fsl
fsl-5.0-core analysis tools for FMRI, MRI and DTI brain imaging
fsl-core metapackage for the latest version of FSL
fsl-feeds
fsl-feeds FSL Evaluation and Example Data Suite
fsldata
fsl-5.0-doc-wiki FSL documentation wiki
fsl-atlases FSL's MNI152 standard space stereotaxic brain atlases
fsl-bangor-cerebellar-atlas probabilistic atlas of the human cerebellum
fsl-first-data model data for FIRST subcortical brain segmentation
fsl-harvard-oxford-atlases probabilistic atlas of human cortical brain areas (lateralized)
fsl-harvard-oxford-cortical-lateralized-atlas probabilistic atlas of human cortical and subcortical brain areas
fsl-jhu-dti-whitematter-atlas human brain white-matter atlas
fsl-juelich-histological-atlas brain atlas based on cyto- and myelo-architectonic segmentations
fsl-mni-structural-atlas hand-segmented single-subject human brain atlas
fsl-mni152-templates MNI152 stereotaxic brain templates for FSL
fsl-oxford-striatal-atlas probabilistic atlas of the human brain's sub-striatal regions
fsl-oxford-thalamic-connectivity-atlas probabilistic brain atlas of thalamic white-matter connectivity
fsl-possum-data sequence templates for the POSSUM MRI-simulator
fsl-resting-connectivity-parcellation-atlases brain parcellations based on resting state connectivity
fsl-subthalamic-nucleus-atlas probabilistic subthalamic nucleus atlas
fsl-talairach-daemon-atlas structural anatomy labels of the Talairach atlas
fslmeta
fsl-5.0-complete metapackage for the entire FSL suite (tools and data)
fsl-complete metapackage for the entire FSL suite (tools and data)
fslview
fslview viewer for (f)MRI and DTI data
fslview-doc Documentation for FSLView
garmindev
qlandkartegt-garmin QLandkarteGT plugins to access Garmin devices
gcalcli
gcalcli Google Calendar Command Line Interface
gccxml
gccxml XML output extension to GCC
libgccxml-dev Libraries for building extension to gccxml output
gifticlib
gifti-bin tools shipped with the GIFTI library
libgiftiio-dev IO library for the GIFTI cortical surface data format
libgiftiio0 IO library for the GIFTI cortical surface data format
git-annex
git-annex-standalone manage files with git, without checking their contents into git -- standalone build
glew
glew-utils OpenGL Extension Wrangler - utilities
libglew1.9 OpenGL Extension Wrangler - runtime environment
libglew1.9-dbg OpenGL Extension Wrangler (debugging symbols)
libglew1.9-dev OpenGL Extension Wrangler - development environment
libglewmx1.9 OpenGL Extension Wrangler (Multiple Rendering Contexts)
libglewmx1.9-dbg OpenGL Extension Wrangler MX (debugging symbols)
libglewmx1.9-dev OpenGL Extension Wrangler MX - development environment
gmsl
gmsl extra functions to extend functionality of GNU Makefiles
google-glog
libgoogle-glog-dev library that implements application-level logging.
libgoogle-glog-doc documentation of gloogle-glog
libgoogle-glog0 library that implements application-level logging.
guacamole
guacamole HTML5 web application for accessing remote desktops
guacamole-tomcat Tomcat-based Guacamole install with VNC support
guacamole-client
guacamole HTML5 web application for accessing remote desktops
guacamole-tomcat Tomcat-based Guacamole install with VNC support
guacamole-server
guacd Guacamole proxy daemon
libguac-client-rdp0 RDP support plugin for Guacamole
libguac-client-ssh0 SSH support plugin for Guacamole
libguac-client-vnc0 VNC support plugin for Guacamole
libguac-dev Development headers for the core Guacamole library
libguac5 Core Guacamole library used by guacd and client plugins
guacd
guacd Guacamole proxy daemon
haxby2001
haxby2001-faceobject face and object processing in ventral temporal cortex (fMRI)
haxby2001-faceobject-subject1 face and object processing in ventral temporal cortex (fMRI)
haxby2001-faceobject-subject2 face and object processing in ventral temporal cortex (fMRI)
haxby2001-faceobject-subject3 face and object processing in ventral temporal cortex (fMRI)
haxby2001-faceobject-subject4 face and object processing in ventral temporal cortex (fMRI)
haxby2001-faceobject-subject5 face and object processing in ventral temporal cortex (fMRI)
haxby2001-faceobject-subject6 face and object processing in ventral temporal cortex (fMRI)
impressive
impressive PDF presentation tool with eye candies
incf-nidash-oneclick
incf-nidash-oneclick-clients utility for pushing DICOM data to the INCF datasharing server
init-system-helpers
dh-systemd debhelper add-on to handle systemd unit files
init-system-helpers helper tools for all init systems
insighttoolkit4
insighttoolkit4-examples Image processing toolkit for registration and segmentation - examples
insighttoolkit4-python Image processing toolkit for registration and segmentation - Python bindings
libinsighttoolkit4-dbg Debugging information for the Insight Toolkit
libinsighttoolkit4-dev Image processing toolkit for registration and segmentation - development
libinsighttoolkit4.7 Image processing toolkit for registration and segmentation - runtime
ipython01x
ipython01x enhanced interactive Python shell
ipython01x-doc enhanced interactive Python shell
ipython01x-notebook enhanced interactive Python shell -- notebook dummy package
ipython01x-parallel enhanced interactive Python shell
ipython01x-qtconsole enhanced interactive Python shell -- notebook dummy package
ipython1x
ipython1x enhanced interactive Python shell
ipython1x-doc enhanced interactive Python shell
ipython1x-notebook enhanced interactive Python shell -- notebook dummy package
ipython1x-parallel enhanced interactive Python shell
ipython1x-qtconsole enhanced interactive Python shell -- notebook dummy package
ipython2x
ipython2x enhanced interactive Python shell
ipython2x-doc enhanced interactive Python shell
isis
isis-utils utilities for the ISIS neuroimaging data I/O framework
libisis-core-dev I/O framework for neuroimaging data
libisis-core0 I/O framework for neuroimaging data
libisis-ioplugins-common data format plugins for the ISIS framework
libisis-ioplugins-dicom dicom io plugin for the ISIS framework
libisis-qt4-0 Qt4 bindings for ISIS data I/O framework
libisis-qt4-dev Qt4 bindings for ISIS data I/O framework (development headers)
python-isis Python bindings for ISIS data I/O framework (development headers)
itksnap
itksnap semi-automatic segmentation of structures in 3D images
jdcal
python-jdcal Julian dates from proleptic Gregorian and Julian calendars
python3-jdcal Julian dates from proleptic Gregorian and Julian calendars
jist
jist Java Image Science Toolkit
joblib
python-joblib tools to provide lightweight pipelining in Python
python3-joblib tools to provide lightweight pipelining in Python
kbibtex
kbibtex BibTeX editor for KDE
klustakwik
klustakwik automatic sorting of the samples (spikes) into clusters
lazyarray
python-lazyarray Python module providing a NumPy-compatible lazily-evaluated array
lda
python-lda Topic modeling with latent Dirichlet allocation for Python 3
python3-lda Topic modeling with latent Dirichlet allocation
libcgroup
cgroup-bin Tools to control and monitor control groups
libcgroup-dev Development libraries to develop applications that utilize control groups
libcgroup1 Library to control and monitor control groups
libpam-cgroup PAM module to move a user session into a cgroup
libeatmydata
eatmydata library and utilities designed to disable fsync and friends
libfreenect
freenect library for accessing Kinect device -- metapackage
libfreenect-bin library for accessing Kinect device -- utilities and samples
libfreenect-demos library for accessing Kinect device -- dummy package
libfreenect-dev library for accessing Kinect device -- development files
libfreenect-doc library for accessing Kinect device -- documentation
libfreenect0.5 library for accessing Kinect device
python-freenect library for accessing Kinect device -- Python bindings
libgdf
gdf-tools IO library for the GDF -- helper tools
libgdf-dev IO library for the GDF -- development library
libgdf0 IO library for the GDF (general dataformat for biosignals)
libgdf0-dbg IO library for the GDF -- debug symbols
matlab-gdf IO library for the GDF -- Matlab interface
octave-gdf IO library for the GDF -- Octave interface
libguac
libguac-dev Development headers for the core Guacamole library
libguac3 Core Guacamole library used by guacd and client plugins
libguac-client-vnc
libguac-client-vnc0 VNC support plugin for Guacamole
libmialm
libmialm-dev Development files for the MIA landmark library
libmialm-doc Documentation for the MIA landmark library
libmialm3 Landmark handling for the MIA tool chain
libmialm3-dbg Debug information for the MIA landmark library
libpgm
libpgm-5.1-0 OpenPGM shared library
libpgm-dbg OpenPGM debugging symbols
libpgm-dev OpenPGM development files
libsvm
libsvm-dev The LIBSVM header files
libsvm-java Java API to support vector machine library
libsvm-tools The LIBSVM binary tools
libsvm3 library implementing support vector machines
libsvm3-java Java API to support vector machine library
python-libsvm Python interface for support vector machine library
libusb-1.0
libusb-1.0-0 userspace USB programming library
libusb-1.0-0-dbg userspace USB programming library development files
libusb-1.0-0-dev userspace USB programming library development files
libusb-1.0-0-udeb
libusb-1.0-doc documentation for userspace USB programming
libvistaio
libvistaio-dev Development files for the libvistaio library
libvistaio14 Library for loading and storing various types of binary data
libvistaio14-dbg Debug information for the libvistaio library
lipsia
lipsia analysis suite for MRI and fMRI data
lipsia-doc documentation for LIPSIA
matlab-support
matlab-support distro integration for local MATLAB installations
matlab-support-dev helpers for packages building MATLAB toolboxes
mclaren-rhesus-macaque-atlas
mclaren-rhesus-macaque-atlas MRI-based brain atlas of the rhesus macaque monkey
mcpanel
libmcpanel-dev Library to display multichannel data in realtime (Developement files)
libmcpanel0 Library to display multichannel data in realtime
libmcpanel0-dbg Library to display multichannel data in realtime (Debugging symbols)
mdp
python-mdp Modular toolkit for Data Processing
melview
fsl-melview viewer for the output of FSL's MELODIC
mia
libmia-2.0-8 library for 2D and 3D gray scale image processing
libmia-2.0-8-dbg Debug information for the MIA library
libmia-2.0-dev library for 2D and 3D gray scale image processing, development files
libmia-2.0-doc library for 2D and 3D gray scale image processing, documentation
mia-tools Command line tools for gray scale image processing
mia-tools-dbg Debugging information for the MIA command line tools
mia-tools-doc Cross-referenced documentation of the MIA command line tools
mialmpick
mialmpick Tools for landmark picking in 3D volume data sets
mialmpick-dbg Debug information landmark picking tool mialmpick
mipav
mipav quantitative analysis and visualization of medical images
mlpy
python-mlpy high-performance Python package for predictive modeling
python-mlpy-doc documention and examples for mlpy
python-mlpy-lib low-level implementations and bindings for mlpy
mni-colin27
mni-colin27-minc Talairach stereotaxic space template
mni-colin27-nifti Talairach stereotaxic space template
mni-icbm152-nlin
mni-icbm152-nlin-2009a MNI stereotaxic space human brain template
mni-icbm152-nlin-2009b MNI stereotaxic space human brain template
mni-icbm152-nlin-2009c MNI stereotaxic space human brain template
modules
environment-modules Modular system for handling environment variables
mpi4py
python-mpi4py bindings of the Message Passing Interface (MPI) standard
python-mpi4py-dbg bindings of the MPI standard -- debug symbols
python-mpi4py-doc bindings of the MPI standard -- documentation
python3-mpi4py bindings of the Message Passing Interface (MPI) standard
python3-mpi4py-dbg bindings of the MPI standard -- debug symbols
mriconvert
mriconvert medical image file conversion utility
mricron
mricron magnetic resonance image conversion, viewing and analysis
mricron-data data files for MRIcron
mricron-doc data files for MRIcron
mrtrix
mrtrix diffusion-weighted MRI white matter tractography
mrtrix-doc documentation for mrtrix
msgpack-python
python-msgpack Python implementation of MessagePack format
python3-msgpack Python 3 implementation of MessagePack format
mwrap
mwrap Octave/MATLAB mex generator
neo
python-neo Python IO library for electrophysiological data formats
netselect
netselect speed tester for choosing a fast network server
netselect-apt speed tester for choosing a fast Debian mirror
neurodebian
neurodebian neuroscience-oriented distribution - repository configuration
neurodebian-archive-keyring neuroscience-oriented distribution - GnuPG archive keys
neurodebian-desktop neuroscience-oriented distribution - desktop integration
neurodebian-dev neuroscience-oriented distribution - development tools
neurodebian-popularity-contest neuroscience-oriented distribution - popcon integration
neurosynth
python-neurosynth large-scale synthesis of functional neuroimaging data
neurosynth-data
fsl-neurosynth-atlas neurosynth - atlas for use with FSL, all 525 terms
fsl-neurosynth-top100-atlas neurosynth - atlas for use with FSL, top 100 terms
neurosynth-dataset neurosynth - dataset of extracted terms and activations
nibabel
python-nibabel Python bindings to various neuroimaging data formats
python-nibabel-doc documentation for NiBabel
python3-nibabel Python3 bindings to various neuroimaging data formats
nibabel-snapshot
python-nibabel-snapshot Python bindings to various neuroimaging data formats
nifti2dicom
nifti2dicom convert 3D medical images to DICOM 2D series
nifti2dicom-data data files for nifti2dicom
qnifti2dicom convert 3D medical images to DICOM 2D series (gui)
nifticlib
libnifti-dev IO libraries for the NIfTI-1 data format
libnifti-doc NIfTI library API documentation
libnifti2 IO libraries for the NIfTI-1 data format
nifti-bin tools shipped with the NIfTI library
nilearn
python-nilearn fast and easy statistical learning on neuroimaging data
nipy
python-nipy Analysis of structural and functional neuroimaging data
python-nipy-doc documentation and examples for NiPy
python-nipy-lib Analysis of structural and functional neuroimaging data
python-nipy-lib-dbg Analysis of structural and functional neuroimaging data
nipy-suite
nipy-suite Neuroimaging in Python
nipy-suite-doc Neuroimaging in Python -- documentation
nipype
python-nipype Neuroimaging data analysis pipelines in Python
python-nipype-doc Neuroimaging data analysis pipelines in Python -- documentation
nitime
python-nitime timeseries analysis for neuroscience data (nitime)
python-nitime-doc timeseries analysis for neuroscience data (nitime) -- documentation
nlopt
libnlopt-dev nonlinear optimization library -- development package
libnlopt-guile0 nonlinear optimization library -- Guile bindings
libnlopt0 nonlinear optimization library
octave-nlopt nonlinear optimization library -- GNU Octave package
python-nlopt nonlinear optimization library -- Python bindings
nuitka
nuitka Python compiler with full language support and CPython compatibility
numdiff
numdiff Compare similar files with numeric fields
numexpr
python-numexpr Fast numerical array expression evaluator for Python and NumPy
python-numexpr-dbg Fast numerical array expression evaluator for Python and NumPy (debug ext)
python3-numexpr Fast numerical array expression evaluator for Python 3 and NumPy
python3-numexpr-dbg Fast numerical array expression evaluator for Python 3 and NumPy (debug ext)
numpydoc
python-numpydoc Sphinx extension to support docstrings in Numpy format
odin
libodin-dev static libraries and header for ODIN sequences
mitools view, convert and perform basic maths with medical image datasets
odin develop, simulate and run magnetic resonance sequences
openelectrophy
openelectrophy data analysis framework for intra- and extra-cellular recordings
python-pyssdh data analysis framework for intra- and extra-cellular recordings
openmeeg
libopenmeeg-dev openmeeg library -- development files
libopenmeeg1 library for solving EEG and MEG forward and inverse problems
openmeeg-tools openmeeg library -- command line tools
python-openmeeg openmeeg library -- Python bindings
openopt
python-openopt Python module for numerical optimization
openpyxl
python-openpyxl module to read/write OpenXML xlsx/xlsm files
python3-openpyxl module to read/write OpenXML xlsx/xlsm files
opensesame
opensesame graphical experiment builder for the social sciences
openvibe
openvibe-bin Software platform for BCI (tools and demos)
openvibe-data Software platform for BCI (Data files)
openvibe-dev Software platform for BCI (development files)
openvibe-libs Software platform for BCI (shared libraries)
openvibe-plugins Software platform for BCI (plugins)
openwalnut
libopenwalnut1 Framework for multi-modal medical and brain data visualization
libopenwalnut1-dev Development files for the OpenWalnut visualization framework
libopenwalnut1-doc Developer documentation for the OpenWalnut visualization framework
openwalnut-modules Loaders, algorithms and visualization modules for OpenWalnut
openwalnut-qt4 Qt based user interface for OpenWalnut
ordereddict
python-ordereddict big-oh performance that matches regular dictionaries
orthanc
liborthancclient-dev Orthanc Client development files
liborthancclient-doc Orthanc Client documentation
liborthancclient0.7 Orthanc Client runtime library
orthanc RESTful DICOM server for healthcare and medical research
packaging-tutorial
packaging-tutorial introduction to Debian packaging
pandas
python-pandas data structures for "relational" or "labeled" data
python-pandas-doc documentation and examples for pandas
python-pandas-lib low-level implementations and bindings for pandas
python3-pandas data structures for "relational" or "labeled" data - Python 3
python3-pandas-lib low-level implementations and bindings for pandas - Python 3
parallelpython
python-pp parallel and distributed programming toolkit for Python
patool
patool command line archive file manager
patsy
python-patsy statistical models in Python using symbolic formulas
python-patsy-doc documentation and examples for patsy
python3-patsy statistical models in Python using symbolic formulas
pprocess
python-pprocess elementary parallel programming for Python
psignifit
python-pypsignifit psychometric analysis of psychophysics data in Python
psignifit3
python-pypsignifit psychometric analysis of psychophysics data in Python
psychopy
psychopy environment for creating psychology stimuli in Python
psychtoolbox-3
octave-psychtoolbox-3 toolbox for vision research -- Octave bindings
psychtoolbox-3-common toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-dbg toolbox for vision research -- debug symbols for binaries
psychtoolbox-3-lib toolbox for vision research -- arch-specific parts
psychtoolbox-3-nonfree
matlab-psychtoolbox-3 toolbox for vision research -- Matlab bindings
matlab-psychtoolbox-3-nonfree toolbox for vision research -- Matlab binary blobs
octave-psychtoolbox-3-nonfree toolbox for vision research -- Octave binary blobs
pycharm-community-sloppy
pycharm-community-sloppy PyCharm IDE (sloppy packaging)
pydicom
python-dicom DICOM medical file reading and writing
pyentropy
python-pyentropy Python module for estimation information theoretic quantities
pyepl
python-pyepl module for coding psychology experiments in Python
python-pyepl-common module for coding psychology experiments in Python
pyglet
python-pyglet cross-platform windowing and multimedia library
pymc
python-pymc Bayesian statistical models and fitting algorithms
python-pymc-doc Bayesian statistical models and fitting algorithms
pymvpa
python-mvpa multivariate pattern analysis with Python
python-mvpa-doc documentation and examples for PyMVPA
python-mvpa-lib low-level implementations and bindings for PyMVPA
pymvpa2
python-mvpa2 multivariate pattern analysis with Python v. 2
python-mvpa2-doc documentation and examples for PyMVPA v. 2
python-mvpa2-lib low-level implementations and bindings for PyMVPA v. 2
pymvpa2-tutorialdata
python-mvpa2-tutorialdata data files for the PyMVPA tutorial
pynifti
python-nifti Python interface to the NIfTI I/O libraries
pynn
python-pynn simulator-independent specification of neuronal network models
pyoptical
python-pyoptical python interface to the CRS 'OptiCAL' photometer
pysurfer
python-surfer visualize Freesurfer's data in Python
pytables
python-tables hierarchical database for Python based on HDF5
python-tables-data hierarchical database for Python based on HDF5 - test data
python-tables-dbg hierarchical database for Python based on HDF5 (debug extension)
python-tables-doc hierarchical database for Python based on HDF5 - documentation
python-tables-lib hierarchical database for Python based on HDF5 (extension)
python3-tables hierarchical database for Python3 based on HDF5
python3-tables-dbg hierarchical database for Python 3 based on HDF5 (debug extension)
python3-tables-lib hierarchical database for Python3 based on HDF5 (extension)
pytest
python-pytest Simple, powerful testing in Python
python-pytest-doc Simple, powerful testing in Python - Documentation
python3-pytest Simple, powerful testing in Python3
pytest-localserver
python-pytest-localserver py.test plugin to test server connections locally (Python 2)
python3-pytest-localserver py.test plugin to test server connections locally (Python 3)
pytest-tornado
python-pytest-tornado py.test plugin to test Tornado applications
python3-pytest-tornado py.test plugin to test Tornado applications (Python 3)
python-expyriment
python-expyriment Python library for cognitive and neuroscientific experiments
python-git
python-git Python library to interact with Git repositories
python-gitdb
python-gitdb pure-Python git object database
python-mne
python-mne Python modules for MEG and EEG data analysis
python-networkx
python-networkx tool to create, manipulate and study complex networks
python-networkx-doc tool to create, manipulate and study complex networks - documentation
python-neuroshare
python-neuroshare Python interface and tools for Neuroshare
python-neuroshare-doc Python interface and tools for Neuroshare
python-psutil
python-psutil module providing convenience functions for managing processes
python3-psutil module providing convenience functions for managing processes (Python3)
python-py
python-py Advanced Python development support library (Python 2)
python3-py Advanced Python development support library (Python 3)
python-pyo
python-pyo Python module written in C to help digital signal processing script creation
python-quantities
python-quantities Library for computation of physical quantities with units, based on numpy
python-scipy
python-scipy scientific tools for Python
python-scipy-dbg scientific tools for Python - debugging symbols
python-scrapy
python-scrapy Python web scraping and crawling framework
python-scrapy-doc Python web scraping and crawling framework documentation
python-smmap
python-smmap pure Python implementation of a sliding window memory map manager
python-tornado
python-tornado scalable, non-blocking web server and tools
python-traits
python-traits4 Manifest typing and reactive programming for Python
python-tz
python-tz Python version of the Olson timezone database
python-w3lib
python-w3lib Collection of web-related functions for Python (Python 2)
python3-w3lib Collection of web-related functions for Python (Python 3)
python-werkzeug
python-werkzeug collection of utilities for WSGI applications
python-werkzeug-doc documentation for the werkzeug Python library
python3-werkzeug collection of utilities for WSGI applications
python3-dateutil
python3-dateutil powerful extensions to the standard datetime module in Python 3
pyxid
python-pyxid interface for Cedrus XID and StimTracker devices
pyxnat
python-pyxnat Interface to access neuroimaging data on XNAT servers
pyzmq
python-zmq Python bindings for 0MQ library
python-zmq-dbg Python bindings for 0MQ library - debugging files
qlandkartegt
qlandkarte Transitional package for QLandkarteGT
qlandkartegt GPS mapping (GeoTiff and vector) and GPSr management
rdfind
rdfind find duplicate files utility
remake
remake GNU make fork with improved error reporting and debugging
rorden-mri-tutorial
rorden-mri-tutorial Chris Rorden's MRI analysis tutorial
rorden-mri-tutorial-data data files for Chris Rorden's MRI analysis tutorial
rtfilter
librtfilter-dev realtime digital filtering library (development files)
librtfilter1 realtime digital filtering library
librtfilter1-dbg realtime digital filtering library (debugging symbols)
scikit-learn
python-scikits-learn transitional compatibility package for scikits.learn -> sklearn migration
python-sklearn Python modules for machine learning and data mining
python-sklearn-doc documentation and examples for scikit-learn
python-sklearn-lib low-level implementations and bindings for scikit-learn
seaborn
python-seaborn statistical visualization library
python3-seaborn statistical visualization library
shogun
libshogun-dev Large Scale Machine Learning Toolbox
libshogun11 Large Scale Machine Learning Toolbox
shogun-cmdline-static Large Scale Machine Learning Toolbox
shogun-csharp-modular Large Scale Machine Learning Toolbox
shogun-dbg Large Scale Machine Learning Toolbox
shogun-doc-cn Large Scale Machine Learning Toolbox
shogun-doc-en Large Scale Machine Learning Toolbox
shogun-elwms-static Large Scale Machine Learning Toolbox
shogun-java-modular Large Scale Machine Learning Toolbox
shogun-lua-modular Large Scale Machine Learning Toolbox
shogun-python-modular Large Scale Machine Learning Toolbox
shogun-python-static Large Scale Machine Learning Toolbox
shogun-r-static Large Scale Machine Learning Toolbox
shogun-ruby-modular Large Scale Machine Learning Toolbox
sigviewer
sigviewer GUI viewer for biosignals such as EEG, EMG, and ECG
simplegeneric
python-simplegeneric Simple generic functions for Python
skimage
python-skimage Python modules for image processing
python-skimage-doc Documentation and examples for scikit-image
python-skimage-lib Optimized low-level algorithms for scikit-image
python3-skimage Python 3 modules for image processing
python3-skimage-lib Optimized low-level algorithms for Python 3 scikit-image
slicer
libslicer3 software package for visualization and image analysis - runtime
libslicer3-dev software package for visualization and image analysis - development
slicer software package for visualization and image analysis - main application
slicer-data software package for visualization and image analysis - share
sphinx
python-sphinx tool for producing documentation for Python projects
sphinx-rtd-theme
python-sphinx-rtd-theme sphinx theme from readthedocs.org (Python 2)
python3-sphinx-rtd-theme sphinx theme from readthedocs.org (Python 3)
spm8
matlab-spm8 analysis of brain imaging data sequences for Matlab
spm8-common analysis of brain imaging data sequences
spm8-data data files for SPM8
spm8-doc manual for SPM8
spyder
python-spyderlib python IDE for scientists
spyder python IDE for scientists
spykeutils
python-spykeutils utilities for analyzing electrophysiological data
spykeviewer
spykeviewer graphical utility for analyzing electrophysiological data
sri24-atlas
sri24-atlas MRI-based brain atlas of normal adult human brain anatomy
stabilitycalc
stabilitycalc evaluate fMRI scanner stability
statsmodels
python-scikits.statsmodels transitional compatibility package for statsmodels migration
python-statsmodels Python module for the estimation of statistical models
python-statsmodels-doc documentation and examples for statsmodels
python-statsmodels-lib low-level implementations and bindings for statsmodels
stimfit
python-stfio Python module to read common electrophysiology file formats.
stimfit Program for viewing and analyzing electrophysiological data
stimfit-dbg Debug symbols for stimfit
svgtune
svgtune tool to generate a set of .svg files out of a single .svg file
sympy
python-sympy Computer Algebra System (CAS) in Python
testkraut
testkraut test and evaluate heterogeneous data processing pipelines
tigervnc
tigervnc-common Virtual network computing; Common software needed by clients and servers
tigervnc-scraping-server Virtual network computing server software
tigervnc-standalone-server Virtual network computing server software
tigervnc-viewer Virtual network computing client software for X
tigervnc-xorg-extension Virtual network computing server software
ubuntu-keyring
ubuntu-keyring GnuPG keys of the Ubuntu archive
ubuntu-keyring-udeb
underscore
libjs-underscore JavaScript's functional programming helper library
utopia-documents
utopia-documents PDF reader that displays interactive annotations on scientific articles.
utopia-documents-dbg debugging symbols for utopia-documents
via
libvia-dev library for volumetric image analysis
libvia-doc VIA library API documentation
libvia2 library for volumetric image analysis
via-bin tools for volumetric image analysis
visionegg
python-visionegg Python library for 2D/3D visual stimulus generation
vmri-nonfree
virtual-mri-nonfree Virtual Magnetic Resonance Imager
vowpal-wabbit
libvw-dev fast and scalable online machine learning algorithm - development files
libvw0 fast and scalable online machine learning algorithm - dynamic library
vowpal-wabbit fast and scalable online machine learning algorithm
vowpal-wabbit-dbg fast and scalable online machine learning algorithm - debug files
vowpal-wabbit-doc fast and scalable online machine learning algorithm - documentation
voxbo
voxbo processing, statistical analysis, and display of brain imaging data
vrpn
libvrpn-dev Virtual Reality Peripheral Network (development files)
libvrpn0 Virtual Reality Peripheral Network (client library)
libvrpnserver0 Virtual Reality Peripheral Network (server library)
vrpn Virtual Reality Peripheral Network (executables)
vrpn-dbg Virtual Reality Peripheral Network (debugging symbols)
vtk
libvtk-java Visualization Toolkit - A high level 3D visualization library - java
libvtk5-dev VTK header files for building C++ code
libvtk5-qt4-dev Visualization Toolkit - A high level 3D visualization library - Qt devel
libvtk5.8 Visualization Toolkit - A high level 3D visualization library - runtime
libvtk5.8-qt4 Visualization Toolkit - A high level 3D visualization library - Qt runtime
python-vtk Python bindings for VTK
tcl-vtk Tcl bindings for VTK
vtk-doc VTK class reference documentation
vtk-examples C++, Tcl and Python example programs/scripts for VTK
vtk-dicom
libvtk-dicom-java DICOM for VTK - java
libvtk-dicom0.5 DICOM for VTK - lib
libvtk-dicom0.5-dev DICOM for VTK - dev
python-vtk-dicom DICOM for VTK - python
vtk-dicom-tools DICOM for VTK - tools
xdffileio
libxdffileio-dev Library to read/write EEG data file formats (development files)
libxdffileio0 Library to read/write EEG data file formats
libxdffileio0-dbg Library to read/write EEG data file formats (debugging symbols)
xmhtml
xmhtml1 A Motif widget for display HTML 3.2
xmhtml1-dev A Motif widget for display HTML 3.2
xppaut
xppaut Phase Plane Plus Auto: Solves many kinds of equations
zeromq
libzmq-dbg ZeroMQ lightweight messaging kernel (debugging symbols)
libzmq-dev ZeroMQ lightweight messaging kernel (development libraries and header files)
libzmq1 ZeroMQ lightweight messaging kernel (shared library)
The source code for this portal is licensed under the GPL-3 and is available on GitHub.